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Table 3 Differentially regulated cell wall metabolism genes.

From: Tomato root transcriptome response to a nitrogen-enriched soil patch

Probe Set ID Putative Annotation Fold Change
(High N vs. water)
P-value Fold Change
(Low N vs. water)
P-value
Les.3273.1.S1_at cell wall-plasma membrane linker 5.98 0.053 1.63 0.424
LesAffx.846.2.S1_at pectinacetylesterase 3.22 0.080 -1.44 0.458
Les.3733.1.S1_at expansin 3.20 0.067 1.45 0.414
Les.3590.1.S1_at endo-xyloglucan transferase 3.12 0.081 -1.33 0.565
LesAffx.4617.1.A1_at pectinesterase 3.10 0.063 -1.41 0.417
Les.2316.1.S1_at cellulose synthase isomer 3.01 0.067 1.88 0.193
Les.2189.1.S1_at pectinesterase 2.51 0.070 -1.07 0.868
Les.218.3.S1_at pectinesterase 2.07 0.094 -1.14 0.710
Les.1604.1.A1_at cobra-like4 phytocheletin synthase 1.91 0.096 1.51 0.219
Les.369.1.S1_at expansin 1.87 0.074 1.48 0.186
LesAffx.69659.1.S1_at chitinase class IV 1.82 0.063 1.65 0.127
Les.5233.1.S1_at pectinesterase 1.76 0.089 1.06 0.829
Les.218.1.S1_at pectinesterase 1.73 0.096 1.27 0.362
Les.3523.1.S1_at polygalacturonase 1.72 0.096 1.17 0.551
Les.4739.1.S1_at UDP-glucose:protein transglucosylase 1.70 0.048 1.28 0.196
Les.109.1.S1_at beta-galactosidase 1.61 0.065 -1.02 0.944
Les.4707.1.S1_at pectate lyase 1.61 0.061 1.67 0.093
Les.2590.2.A1_at endo-xyloglucan transferase A2-like 1.40 0.085 -1.05 0.743
Les.4523.1.S1_at xyloglucan endotransglucosylase-hydrolase -2.53 0.079 -1.58 0.265
Les.4652.1.S1_at esterase/lipase/thioesterase -3.76 0.063 -1.78 0.271
  1. Probe Set ID; Affymetrix identifier for each microarray probeset. Putative Annotation; functional annotation based on tomato protein function or function of Arabidopsis orthologues identified with BLAST searches. Fold Change; linear fold changes (bold values significant at False Discovery Rate (FDR) adjusted P-value < 0.10). Probe Set IDs Les.218.1.S1_at and Les.218.3.S1_at represent the same genes.