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Table 2 Differentially regulated cell growth and division genes.

From: Tomato root transcriptome response to a nitrogen-enriched soil patch

Probe Set ID Putative Annotation Fold Change
(High N vs. water)
P-value
Les.5082.1.S1_at cdc20 cell cycle regulator 3.46 0.044
Les.2170.1.A1_at cyclin 2.89 0.062
Les.5789.1.S1_at histone 3 2.74 0.045
Les.103.1.S1_at cyclin A1 2.65 0.044
Les.3009.3.A1_at histone HTA12 2.52 0.053
Les.3713.1.S1_at B2-type cyclin dependent kinase 2.48 0.044
Les.677.1.S1_at histone H2AX 2.33 0.053
Les.677.2.A1_at histone H2AX 2.31 0.061
Les.5740.1.S1_at replicon protein A 2.28 0.044
LesAffx.66157.1.S1_at mitotic arrest deficient-like 2.21 0.068
LesAffx.19390.1.S1_at cyclin 2.16 0.044
Les.3209.1.S1_at histone H4 replacement isoform 2.11 0.044
Les.3090.1.S1_at histone H3 2.08 0.044
Les.3555.1.S1_at histone H2B-2 2.00 0.044
Les.4603.1.S1_at histone H3 1.96 0.044
Les.5283.1.S1_at minichromosome maintenance protein 1.83 0.084
Les.4439.1.S1_at histone H3 1.80 0.053
Les.4978.1.S1_at DNA-dependant ATPase 1.77 0.091
Les.4442.1.S1_s_at histone H2B-1 1.73 0.044
LesAffx.57438.1.S1_at nucleosome chromatin assembly factor 1.72 0.081
Les.3209.2.A1_at histone H4 replacement isoform 1.72 0.062
Les.4831.1.S1_at nucleosome chromatin assembly factor 1.64 0.053
Les.4539.1.S1_a_at histone H4 1.57 0.091
LesAffx.2226.2.A1_at ribonucleotide reductase-like 1.57 0.091
Les.4564.1.S1_at microtubule associated protein 1.54 0.088
Les.2989.1.S1_at histone HTA7 1.51 0.044
Les.4539.2.S1_at histone H4 1.50 0.091
Les.3009.2.S1_at histone HTA12 1.48 0.066
Les.4940.1.S1_at cyclin -1.56 0.088
Les.3563.1.S1_at ER auxin binding protein 1 -1.74 0.082
  1. Probe Set ID; Affymetrix identifier for each microarray probeset. Putative Annotation; functional annotation based on tomato protein function or function of Arabidopsis orthologues identified with BLAST searches. Fold Change; linear fold changes (bold values significant at False Discovery Rate (FDR) adjusted P-value < 0.10). Probe Set IDs representing the same genes include (Les.3009.3.A1_at and Les.3009.2.S1_at), (Les.677.1.S1_at and Les.677.2.A1_at), (Les.3209.1.S1_at and Les.3209.2.A1_at) and (Les.4539.1.S1_a_at and Les.4539.2.S1_at).