Table 2 The trait-associated SNPs and candidate genes for different phenotypes based on GWAS analysis
Trait | SNP ID | Chromosome and position | p-value | R2(%) | Candidate gene | Functional annotation |
|---|---|---|---|---|---|---|
Hypocotyl width | S7_37420959 | 7:37420959 | 7.79E-06 | 12.68 | LOC127143780 | SNF1-related protein kinase regulatory subunit gamma-1-like |
S7_39301553 | 7:39301553 | 2.33E-05 | 11.52 | LOC111469808 | F-box protein | |
Plant Height | S2_41801130 | 2:41801130 | 3.16E-05 | 18.48 | LOC111459237 | Monocopper oxidase-like protein SKU5 |
S11_48053184 | 11:48053184 | 4.19E-05 | 17.83 | LOC111809662 | Cold shock domain-containing protein 3 -like | |
S13_6069200 | 13:6069200 | 7.91E-05 | 16.78 | LOC111009991 | U-box domain-containing protein 44-like | |
AUDPC | S2_11917148 | 2:11917148 | 7.83E-05 | 15.40 | LOC111009722 | Peroxidase 40 |