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Table 1 Putative salt stress responding pathways and genes regulated by NtWRKY65

From: Overexpression of the WRKY transcription factor gene NtWRKY65 enhances salt tolerance in tobacco (Nicotiana tabacum)

Functional pathways

Gene_ID

FPKM

Gene annotation

WT-CK

OE11-CK

WT-Salt

OE11-Salt

Cell wall component metabolism

Nitab4.5_0001310g0010

18.23

42.04

1.7

21.02

Glycoside hydrolase, family 19

Nitab4.5_0003207g0080

22.7

72.47

72.87

2124.31

Glycoside hydrolase, family 19

Nitab4.5_0005898g0010

180.62

470.07

36.82

256.2

Glycoside hydrolase, family 19

Nitab4.5_0001675g0070

0.67

3.66

3.66

11.26

Xyloglucan endotransglucosylase/hydrolase

Nitab4.5_0002630g0010

2.8

26.52

23.25

77.17

Xyloglucan endotransglucosylase/hydrolase

Response to osmotic stress

Nitab4.5_0002712g0010

52.22

135.04

20.47

41.64

Wound stress protein, lipase/lipooxygenase

Nitab4.5_0004173g0010

40.05

93.92

4.44

17.04

Wound stress protein, lipase/lipooxygenase

Nitab4.5_0004173g0030

21.12

61.62

1.69

6.58

Wound stress protein, lipase/lipooxygenase

Cellular oxidant detoxification

Nitab4.5_0002823g0010

9.7

29.26

3.97

15.03

Glutathione S-transferase-like protein

Nitab4.5_0002731g0010

0.9

5.4

4.49

17.05

Peroxidase

Nitab4.5_0015635g0010

0.79

3.61

8.24

20.46

Peroxidase

Protein phosphorylation

Nitab4.5_0000038g0030

11.29

24.52

0.29

2.96

Cysteine-rich receptor-like protein kinase

Nitab4.5_0010147g0020

37.86

93.32

2.76

37.68

Cysteine-rich receptor-like protein kinase

Nitab4.5_0001223g0050

0.43

1.38

1.64

4.1

Serine_threonine-protein kinase receptor

Nitab4.5_0004625g0010

1.5

3.08

0.3

1.11

Serine_threonine-protein kinase receptor

Nitab4.5_0006529g0010

0.24

0.92

0.87

3.51

Serine_threonine kinase receptor

Nitab4.5_0000057g0040

0.11

0.7

0.63

1.87

Receptor like kinase

Auxin signaling pathway

Nitab4.5_0000209g0290

8.37

19.72

2.27

7.47

Auxin responsive protein, AUX_IAA protein

Nitab4.5_0004887g0040

6.53

24.96

1.42

5.28

Auxin responsive protein, AUX_IAA protein

Nitab4.5_0001650g0130

14.75

35.33

6.19

18.44

Auxin responsive SAUR protein

Transcription factor

Nitab4.5_0000040g0110

2.78

10.92

11.60

25.93

NAC transcription factor

Nitab4.5_0000048g0080

4.97

15.68

22.46

101.67

WRKY transcription factor

Nitab4.5_0000381g0130

4.49

23.86

14.35

64.25

WRKY transcription factor

Nitab4.5_0000569g0020

4.66

11.08

14.56

32.63

Zinc-finger protein, C2H2-type

Nitab4.5_0000586g0140

0.80

2.69

3.56

12.88

Heat stress transcription factor

Nitab4.5_0001472g0070

6.70

0.08

18.19

5.83

Basic-leucine zipper protein

Nitab4.5_0002758g0040

4.93

20.64

32.69

155.25

WRKY transcription factor

Nitab4.5_0007691g0010

0.75

3.77

2.39

11.99

WRKY transcription factor

Nitab4.5_0012870g0010

10.60

31.87

4.80

17.38

WRKY transcription factor

  1. Note: CK and -salt in the sample name indicate 0 mM NaCl and 150 mM NaCl treatments, respectively. FPKM, fragments per kilobase of transcript per million fragments mapped