Skip to main content
Fig. 5 | BMC Plant Biology

Fig. 5

From: Modulation of early gene expression responses to water deprivation stress by the E3 ubiquitin ligase ATL80: implications for retrograde signaling interplay

Fig. 5

Patterns of rapidly induced transcription in response to WDS are abolished in atl80. (A) K-means cluster analysis of 2156 (DEGs) between time points in WT transcriptomes. DEGs log2FC values were extracted from the atl80 mutant transcriptomic data and clustered by the K-means method. Cluster 11 includes ATL80. (B) Comparison of relative expression between WT and atl80 in response to WDS, assessed by qRT-PCR analysis. CAMBP25, AP2C1, WRKY40 and ERF13 are representative genes selected from cluster 11, which contains 77 PRGs. GGL19, Histone3, FT, GSTU20, CASPL1D1, NAC102, DJC66 and HAP17.6 A represent genes from other clusters

Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us