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Table 1 Differentially expressed genes among 25 most up- and downregulated genes in ‘Linnea’ and ‘PI180693’ at 48 hpi associated with predicted defense response

From: Transcriptomic analysis identifies candidate genes for Aphanomyces root rot disease resistance in pea

Gene id

Closest BLAST hit

Linnea

UK16

Linnea

SE51

PI180693

UK16

PI180693

SE51

Psat0s1622g0080.1

NDR1/HIN1-like protein 10

2.501

n.s

n.s

-2.073

Psat2g109600.1

MLP-like protein 423

-3.685

n.s

-2.466

n.s

Psat4g185080.1*

Oxidation–reduction process, 9S-lipoxygenase-3-like

-6.734

n.s

-2.567

n.s

Psat4g182840.1

Disease resistance protein RPV1-like

4.218

1.175

2.261

n.s

Psat5g289880.1*

Oxidation–reduction process, 9S-lipoxygenase-3-like

-1.507

n.s

n.s

5.411

Psat5g242640.1

Pathogenesis-related protein

2.412

n.s

2.839

5.576

Psat5g291320.1*

Oxidation–reduction process, 9S-lipoxygenase-3-like

n.s

n.s

n.s

5.741

Psat6g146200.1

Pathogenesis-related protein PR-4-like

9.274

5.081

10.142

6.400

Psat6g109120.1

Pathogenesis-related protein PR-4-like

8.936

n.s

7.875

n.s

Psat6g042680.1

MLP-like protein 34

n.s

n.s

-2.448

n.s

Psat7g035720.1

Putative thaumatin

8.733

4.801

8.258

5.198

Psat7g029960.1

Disease resistance response protein 206-like

8.082

n.s

7.144

5.338

Psat7g036280.1

Thaumatin-like protein

8.585

4.371

8.915

5.439

  1. *Genes segregating with partial resistance to Aphanomyces root rot described in Wu et al. 2022, n.s. Non-significant, differential gene expression compared to mock treatments, absolute value of log2FC > 1, adjusted p-value < 0.05