Table 1 Summary of the 49 newly sequenced plastomes of Brassicaceae
Taxa | Voucher | Sample ID | Plastome size (bp) | LSC (bp) | IR (bp) | SSC (bp) | GC content (%) | Number of PCGs (unique) | Number of tRNAs (unique) | Number of rRNAs (unique) | Pseudogene |
|---|---|---|---|---|---|---|---|---|---|---|---|
Alyssum simplex | XJ-92 | HM2130 | 150,682 | 80,743 | 26,279 | 17,381 | 36.4 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Barbarea vulgaris | Ge130089 | HM0089 | 154,958 | 83,903 | 26,504 | 18,047 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Camelina microcarpa | XJ-05 | HM2043 | 153,026 | 82,236 | 26,484 | 17,822 | 36.5 | 83 (77) | 37 (30) | 8 (4) | rps16, ycf15 |
Camelina microcarpa | Q-102 | HM1666 | 153,061 | 82,236 | 26,484 | 17,857 | 36.5 | 83 (77) | 37 (30) | 8 (4) | rps16, ycf15 |
Capsella orientalis | Ge130613 | HM0613 | 154,549 | 83,802 | 26,454 | 17,839 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Chorispora sibirica | XJ-120 | HM2158 | 162,326 | 86,417 | 32,693 | 10,523 | 36.6 | 86 (78) | 37 (30) | 8 (4) | accD |
Chorispora sibirica | gexj-19287 | HM489 | 162,956 | 86,590 | 32,908 | 10,550 | 36.5 | 86 (78) | 37 (30) | 8 (4) | accD |
Dontostemon elegans | XJ-67 | HM2105 | 154,535 | 83,616 | 26,446 | 18,027 | 35.9 | 86 (79) | 37 (30) | 8 (4) | Â |
Dontostemon glandulosus | Ge130056 | HM0056 | 153,628 | 82,669 | 26,461 | 18,037 | 36.1 | 86 (79) | 37 (30) | 8 (4) | Â |
Draba alpina | Q-027 | HM1591 | 152,549 | 81,993 | 26,386 | 17,784 | 36.5 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Draba alpina | gexj-19293 | HM495 | 152,549 | 81,993 | 26,386 | 17,784 | 36.5 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Draba fladnizensis | Ge130137 | HM0137 | 153,853 | 83,037 | 26,376 | 18,064 | 36.5 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Draba melanopus | Ge130049 | HM0049 | 153,799 | 82,990 | 26,356 | 18,097 | 36.5 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Draba rockii | Ge130131 | HM0131 | 153,930 | 83,026 | 26,366 | 18,172 | 36.4 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Erysimum flavum | XJ-116 | HM2154 | 154,631 | 83,817 | 26,480 | 17,854 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Erysimum flavum subsp. altaicum | XJ-152 | HM2190 | 154,580 | 83,775 | 26,477 | 17,851 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Erysimum hieraciifolium | XJ-156 | HM2194 | 154,581 | 83,776 | 26,477 | 17,851 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Erysimum quadrangulum | XJ-91 | HM2129 | 154,582 | 83,777 | 26,477 | 17,851 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Erysimum siliculosum | XJ-99 | HM2137 | 154,490 | 83,683 | 26,477 | 17,853 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Erysimum sisymbrioides | XJ-150 | HM2188 | 154,662 | 83,847 | 26,479 | 17,857 | 36.6 | 86 (79) | 37 (30) | 8 (4) | Â |
Euclidium syriacum | XJ-12 | HM2050 | 154,251 | 83,657 | 26,466 | 17,662 | 36.2 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Eutrema nepalense | Ge130150 | HM0150 | 153,647 | 83,576 | 26,062 | 17,947 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Goldbachia sabulosa | XJ-76 | HM2114 | 153,454 | 83,443 | 26,236 | 17,539 | 36.3 | 86 (79) | 37 (30) | 8 (4) | Â |
Isatis gymnocarpa | Q-077 | HM1641 | 153,161 | 83,092 | 26,230 | 17,609 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Isatis gymnocarpa | XJ-130 | HM2168 | 153,168 | 83,099 | 26,230 | 17,609 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Isatis indigotica | XJ-126 | HM2164 | 153,982 | 83,766 | 26,259 | 17,698 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Isatis minima | XJ-66 | HM2104 | 153,643 | 83,424 | 26,255 | 17,709 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Isatis minima | XJ-100 | HM2138 | 153,643 | 83,423 | 26,255 | 17,710 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Lachnoloma lehmannii | gexj-19117 | HM319 | 153,758 | 83,273 | 26,365 | 17,755 | 36.2 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium apetalum | gexj-19096 | HM298 | 154,851 | 83,896 | 26,478 | 17,999 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium appelianum | XJ-124 | HM2162 | 153,369 | 82,380 | 26,482 | 18,025 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium draba | XJ-117 | HM2155 | 153,797 | 82,897 | 26,426 | 18,048 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium ferganense | gexj-19052 | HM254 | 154,725 | 83,823 | 26,449 | 18,004 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium latifolium | gexj-19184 | HM386 | 153,804 | 82,907 | 26,425 | 18,047 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium perfoliatum | gexj-19148 | HM350 | 154,386 | 83,497 | 26,454 | 17,981 | 36.5 | 86 (79) | 37 (30) | 8 (4) | Â |
Lepidium sp. | XJ-151 | HM2189 | 153,990 | 83,561 | 26,451 | 17,527 | 36.5 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Matthiola stoddarti | XJ-119 | HM2157 | 153,354 | 83,345 | 26,217 | 17,575 | 36 | 86 (79) | 37 (30) | 8 (4) | Â |
Meniocus linifolius | gexj-19160 | HM362 | 153,411 | 82,494 | 26,506 | 17,905 | 36.1 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Meniocus linifolius | gexj-19082 | HM284 | 153,375 | 82,459 | 26,506 | 17,904 | 36.1 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Sisymbrium brassiciforme | TW-0047 | HM1247 | 154,240 | 84,046 | 26,250 | 17,694 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Sisymbrium loeselii | XJ-09 | HM2047 | 154,600 | 84,429 | 26,268 | 17,635 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Sisymbrium polymorphum | XJ-133 | HM2171 | 154,469 | 84,298 | 26,268 | 17,635 | 36.4 | 86 (79) | 37 (30) | 8 (4) | Â |
Sterigmostemum caspicum | Q-197 | HM1761 | 153,754 | 83,707 | 26,250 | 17,547 | 36.3 | 86 (79) | 37 (30) | 8 (4) | Â |
Strigosella africana | TW-0025 | HM1225 | 154,155 | 83,141 | 26,511 | 17,992 | 36.3 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Strigosella scorpioides | TW-0010 | HM1210 | 155,018 | 84,069 | 26,509 | 17,931 | 36.2 | 86 (79) | 37 (30) | 8 (4) | Â |
Strigosella scorpioides | gexj-19122 | HM324 | 154,133 | 83,183 | 26,509 | 17,932 | 36.3 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Strigosella scorpioides | TW-0030 | HM1230 | 154,132 | 83,181 | 26,509 | 17,933 | 36.3 | 85 (78) | 37 (30) | 8 (4) | rps16 |
Tetracme quadricornis | TW-0094 | HM1294 | 154,488 | 84,027 | 26,350 | 17,761 | 36.2 | 86 (79) | 37 (30) | 8 (4) | Â |
Tetracme recurvata | gexj-19104 | HM306 | 154,562 | 83,647 | 26,494 | 17,927 | 36.2 | 86 (79) | 37 (30) | 8 (4) | Â |