Table 3 Bursaphelenchus xylophilus putative population-specific markers and their mention in secretomic and transcriptomic studies. IDs selected as putative virulence biomarkers in presented secretomic studies are marked in bold. aCorrespondence determined by BLASTp analyses in this study
Number and accession ID from Ciordia et al. 2016 | Best correspondence to B. xylophilus genomic data (PRJEA64437_WBPS17)a | Presence in B. xylophilus secretome- References | Presence in B. xylophilus transcriptome as related to pathogenicity- References | Description | |||
|---|---|---|---|---|---|---|---|
ID | % identity | E value | |||||
3 | BUX.c03212.1 | BXY_1447300.1 | 100 | 2.27E-98 | Â | Pecanex-like protein | |
4 | BUX.c04300.1 | BXY_1507900.1 | 100 | 4.18E-97 | [51] | Â | EGF-like domain-containing |
9 | BUX.s00036.143 | BXY_0436400.1 | 100 | 7.10E-94 | [51] | Â | 40S ribosomal protein S24 |
10 | BUX.s00036.52 | BXY_0427900.1 | 100 | 1.13E-118 | Â | Â | Aspartic peptidase |
11 | BUX.s00055.288 | BXY_0161100.1 | 100 | 1.17E-125 | Â | Ferritin | |
13 | BUX.s00083.14 | BXY_0840600.1 | 100 | 0.00E + 00 | [51] |  | Carboxylesterase |
21 | BUX.s00083.88 | BXY_0847200.1 | 99.6 | 0.00E + 00 |  |  | Oxidored FMN domain-containing protein |
22 | BUX.s00083.91 | BXY_0847500.1 | 100 | 0.00E + 00 | [51] |  | Oxidored FMN domain-containing protein |
24 | BUX.s00110.21 | BXY_0540200.1 | 100 | 7.52E-62 | [103] | Â | Saposin B-type domain-containing protein |
26 | BUX.s00110.84 | BXY_0545400.1 | 100 | 4.16E-113 | Â | Â | Glutathione S-transferase |
29 | BUX.s00116.187 | BXY_0752000.1 | 100 | 6.33E-106 | Â | Â | Unknown |
30 | BUX.s00116.330 | BXY_0765700.1 | 100 | 0.00E + 00 |  | Proactivator polypeptide | |
31 | BUX.s00116.358 | BXY_0768100.1 | 100 | 0.00E + 00 |  | Inorganic diphosphatase | |
32 | BUX.s00116.517 | BXY_0783200.1 | 100 | 0.00E + 00 |  | Aldo-ket reductase | |
38 | BUX.s00116.871 | BXY_0816900.1 | 100 | 2.23E-78 | Â | Endopeptidase inhibitor cysteine-type | |
42 | BUX.s00119.22 | BXY_0935900.1 | 100 | 1.29E-147 | [51] | Â | TspO/MBR-related protein |
46 | BUX.s00139.156 | BXY_0592900.1 | 100 | 4.76E-133 | Â | Translationally-controlled tumor protein | |
47 | BUX.s00139.22 | BXY_0580100.1 | 100 | 0.00E + 00 | [112] | Unknown | |
48 | BUX.s00139.23 | BXY_0580200.1 | 100 | 0.00E + 00 |  | Secreted protein | |
49 | BUX.s00139.24 | BXY_0580300.1 | 100 | 0.00E + 00 |  | Unknown | |
54 | BUX.s00150.2 | BXY_1230900.1 | 100 | 2.53E-112 | Â | Â | GLOBIN domain-containing protein |
57 | BUX.s00252.68 | BXY_0649500.1 | 92.2 | 3.50E-71 | Â | Beta-hexosaminidase | |
58 | BUX.s00252.81 | BXY_0650500.1 | 100 | 0.00E + 00 |  | Hydroxymethylglutaryl-CoA synthase | |
59 | BUX.s00298.18 | BXY_0555900.1 | 100 | 0.00E + 00 |  | Aspartic peptidase | |
61 | BUX.s00298.19 | BXY_0556000.1 | 100 | 0.00E + 00 |  | Unknown | |
62 | BUX.s00298.7 | BXY_0554700.1 | 100 | 0.00E + 00 |  |  | Unknown |
63 | BUX.s00333.150 | BXY_0610200.1 | 100 | 2.60E-79 | Â | SnoaL-like domain-containing protein | |
67 | BUX.s00333.63 | BXY_0601700.1 | 97.9 | 2.77E-134 | Â | Â | Unknown |
75 | BUX.s00351.347 | BXY_1544500.1 | 100 | 3.66E-87 | [101] | [111] | Cysteine peptidase inhibitor |
76 | BUX.s00351.387 | BXY_1548700.1 | 100 | 0.00E + 00 | [51] |  | Aspartic peptidase |
82 | BUX.s00397.93 | BXY_0701300.1 | 100 | 7.09E-115 | Â | 60S ribosomal protein L24 | |
86 | BUX.s00422.677 | BXY_1672800.1 | 100 | 3.82E-122 | [112] | Unknown | |
99 | BUX.s00508.71 | BXY_0923300.1 | 99.6 | 0.00E + 00 | [51] |  | Aminopeptidase |
102 | BUX.s00579.159 | BXY_1386500.1 | 100 | 0.00E + 00 | [60] | Catalase | |
106 | BUX.s00613.1 | BXY_1265900.1 | 100 | 3.03E-52 | [51] | Â | CsbD family protein |
110 | BUX.s00647.122 | BXY_0299600.1 | 100 | 6.21E-155 | Â | Glutathione s-transferase | |
113 | BUX.s00649.27 | BXY_0967200.1 | 100 | 0.00E + 00 |  | PKS ER domain-containing protein | |
120 | BUX.s00713.693 | BXY_0376300.1 | 100 | 0.00E + 00 |  |  | Unknown |
121 | BUX.s00713.744 | BXY_0381200.1 | 100 | 0.00E + 00 |  | Glycoside hydrolase 35 | |
123 | BUX.s00713.89 | BXY_0317400.1 | 100 | 0.00E + 00 |  |  | Serine/threonine-protein phosphatase |
124 | BUX.s00713.926 | BXY_0399900.1 | 100 | 0.00E + 00 | [113] | Short-chain dehydrogenase | |
126 | BUX.s00713.953 | BXY_0402700.1 | 95.5 | 0.00E + 00 |  | Aspartic peptidase | |
127 | BUX.s00713.955 | BXY_0402900.1 | 99.5 | 1.38E-162 | Â | Â | Aspartic peptidase |
129 | BUX.s00729.2 | BXY_1201500.1 | 99.7 | 0.00E + 00 |  |  | Aspartic peptidase |
134 | BUX.s00961.41 | BXY_0629000.1 | 100 | 2.95E-153 | Â | Glutathione S-transferase | |
137 | BUX.s01038.263 | BXY_0192700.1 | 100 | 0.00E + 00 |  | Unknown | |
138 | BUX.s01038.84 | BXY_0176900.1 | 100 | 3.04E-54 | [51] | Â | Small nuclear ribonucleoprotein G |
140 | BUX.s01063.193 | BXY_0503400.1 | 100 | 9.03E-104 | [112] | Transthyretin-like family protein | |
141 | BUX.s01063.30 | BXY_0488400.1 | 100 | 0.00E + 00 | [51] |  | Unknown |
148 | BUX.s01092.201 | BXY_0070300.1 | 100 | 7.11E-95 | [103] | Â | Major sperm protein |
150 | BUX.s01092.9 | BXY_0052900.1 | 100 | 6.24E-105 | Â | Thioredoxin-like protein | |
152 | BUX.s01109.342 | BXY_1742300.1 | 100 | 0.00E + 00 |  | Galectin | |
154 | BUX.s01109.576 | BXY_1765200.1 | 100 | 2.29E-64 | Â | Â | Prothymosin alpha-like protein |
155 | BUX.s01109.624 | BXY_1769700.1 | 100 | 2.89E-114 | Â | Superoxide dismutase | |
159 | BUX.s01143.144 | BXY_0228700.1 | 100 | 0.00E + 00 | [113] | Oxido reductase | |
164 | BUX.s01144.22 | BXY_0103500.1 | 100 | 0.00E + 00 |  | Unknown | |
168 | BUX.s01147.118 | BXY_0203300.1 | 100 | 0.00E + 00 |  | Calreticulin | |
169 | BUX.s01147.119 | BXY_0203300.1 | 97.5 | 5.13E-70 | Â | Â | Calreticulin |
172 | BUX.s01147.198 | BXY_0210100.1 | 100 | 0.00E + 00 | [51] |  | Alcohol dehydrogenase |
179 | BUX.s01254.196 | BXY_1692800.1 | 100 | 1.54E-122 | Â | Unknown | |
180 | BUX.s01254.217 | BXY_1694500.1 | 100 | 0.00E + 00 |  |  | Arginine kinase |
182 | BUX.s01254.306 | BXY_1703500.1 | 100 | 0.00E + 00 |  | Serine peptidase | |
183 | BUX.s01254.317 | BXY_1704600.1 | 100 | 0.00E + 00 |  |  | RNA binding protein |
185 | BUX.s01259.90 | BXY_0833500.1 | 100 | 0.00E + 00 |  | Alpha-galactosidase | |
187 | BUX.s01268.18 | BXY_0957900.1 | 100 | 2.26E-87 | Â | Â | Heat shock protein |
189 | BUX.s01268.84 | BXY_0964200.1 | 100 | 0.00E + 00 |  |  | ADP/ATP translocase |
191 | BUX.s01281.111 | BXY_1566800.1 | 98.6 | 2.43E-153 | Â | DUF2147 domain-containing protein | |
195 | BUX.s01281.502 | BXY_1602400.1 | 100 | 6.86E-129 | Â | Haloacid dehalogenase-like hydrolase | |
197 | BUX.s01281.82 | BXY_1564300.1 | 100 | 0.00E + 00 |  | Aspartic peptidase | |
198 | BUX.s01438.101 | BXY_0665500.1 | 100 | 0.00E + 00 |  | S-formylglutathione hydrolase | |
202 | BUX.s01513.79 | BXY_0259100.1 | 100 | 8.45E-77 | Â | MSP domain-containing protein | |
205 | BUX.s01653.173 | BXY_0016100.1 | 98.6 | 5.46E-163 | Â | GFO IDH MocA domain-containing protein | |
206 | BUX.s01653.174 | BXY_0016100.1 | 100 | 9.80E-78 | Â | GFO IDH MocA domain-containing protein | |
210 | BUX.s01656.23 | BXY_0873400.1 | 100 | 4.28E-156 | Â | Â | NADH dehydrogenase |
212 | BUX.s01661.67 | BXY_1014700.1 | 100 | 0.00E + 00 | Metallo peptidase-neprilysin | ||