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Table 3 SNP loci significantly associated with OTL and OtL using GLM and MLM

From: Genome-wide association study, population structure, and genetic diversity of the tea plant in Guizhou Plateau

Trait

SNP Marker

Chromosome

Position

−log10P

R2(%)

Allele

OTL

S2_68972914

2

68,972,914

5.75

14.19%

T/A

S6_11866408

6

11,866,408

5.41

12.12%

C/G

S12_92443520

12

92,443,520

5.18

13.75%

G/T

S6_137947647

6

137,947,647

5.17

11.94%

C/T

S2_68972933

2

68,972,933

5.04

12.02%

G/T

OtL

S5_141340508

5

141,340,508

7.34

22.44%

T/C

 

S11_64920241

11

64,920,241

5.26

12.94%

C/T

  1. Note Significant SNP loci with − log10(P) = 5.00 (P = 1/n, n = 99,363). R2 is the percentage of phenotypic variance explained by the SNP
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BMC Plant Biology

ISSN: 1471-2229

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