Table 2 Features and quality of RNA-Seq raw data
Sample | Raw reads | Raw bases | Clean reads | Clean bases | Valid bases (%) | Q20 (%) | Q30 (%) |
|---|---|---|---|---|---|---|---|
RP1_1 | 45,914,534 | 6,895,646,368 | 41,726,616 | 6,266,750,510 | 90.87 | 97.63 | 93.56 |
RP1_2 | 48,036,148 | 7,217,616,994 | 44,572,134 | 6,697,170,792 | 92.78 | 97.63 | 93.49 |
RP1_3 | 47,829,164 | 7,186,213,058 | 44,149,200 | 6,633,354,482 | 92.3 | 97.51 | 93.30 |
RP2_1 | 46,457,352 | 6,980,322,962 | 42,578,012 | 6,397,508,672 | 91.65 | 97.71 | 93.75 |
RP2_2 | 47,470,350 | 7,132,904,362 | 44,248,692 | 6,648,837,450 | 93.21 | 97.54 | 93.33 |
RP2_3 | 48,546,582 | 7,298,915,562 | 45,014,520 | 6,767,918,172 | 92.72 | 97.62 | 93.48 |
RP3_1 | 48,015,086 | 7,214,447,948 | 44,487,068 | 6,684,386,548 | 92.65 | 97.74 | 93.80 |
RP3_2 | 47,558,692 | 7,146,123,968 | 44,003,958 | 6,612,037,640 | 92.52 | 97.71 | 93.75 |
RP3_3 | 46,028,504 | 6,916,369,072 | 41,852,288 | 6,288,926,616 | 90.92 | 97.79 | 93.93 |
RP4_1 | 44,978,712 | 6,781,963,606 | 39,775,698 | 5,997,432,980 | 88.43 | 97.90 | 94.11 |
RP4_2 | 42,613,496 | 6,434,637,896 | 38,825,710 | 5,862,682,210 | 91.11 | 97.98 | 94.30 |
RP4_3 | 39,436,484 | 5,954,909,084 | 35,960,550 | 5,430,043,050 | 91.18 | 98.07 | 94.41 |