Characterization and analysis of multi-organ full-length transcriptomes in Sphaeropteris brunoniana and Alsophila latebrosa highlight secondary metabolism and chloroplast RNA editing pattern of tree ferns

Table 4 Number of differentially expressed genes between pairs of samples

Species	Samples	DEGs	Up-expression genes	Down-expression genes
S. brunoniana	Pinna vs Root	8,076	4,210	3,866
	Root vs Rachis	3,308	1,687	1,621
	Pinna vs Rachis	5,877	3,248	2,629
A. latebrosa	Pinna vs Root	8,700	3,893	4,807
	Root vs Rachis	5,195	2,738	2,457
	Pinna vs Rachis	5,896	2,651	3,245

ISSN: 1471-2229