Table 1 Summary of the RNA-seq experiment design, number of raw reads, number of clean reads (percentage of raw reads after cleaning), total reads mapped to the reference genome (percentage of clean reads that have mapped to the reference genome) and number of reads uniquely mapped (percentage of reads uniquely mapped relative to the number of mapped reads) (dpi: days post-inoculation)
From: Insights into the early transcriptomic response against watermelon mosaic virus in melon
Sample name | Phenotype | Inoculation treatment | Time point dpi | Replicate | Raw reads | Cleaned reads (%) | Mapped reads (%) | Uniqueli mapped reads (%) |
|---|---|---|---|---|---|---|---|---|
RIL-10-3-M3dpi_1 | Resistant | Mock-inoculated | 3 | 1 | 41,429,310 | 20,676,828 (49.91%) | 17,808,540 (42.99%) | 15,343,838 (86.16%) |
RIL-10-3-M3dpi_2 | Resistant | Mock-inoculated | 3 | 2 | 42,112,204 | 21,017,363 (49,91%) | 19,272,192 (45.76%) | 17,672,600 (91.70%) |
RIL-10-3-M3dpi_3 | Resistant | Mock-inoculated | 3 | 3 | 42,695,048 | 21,304,504 (49.9%) | 17,246,449 (40.39%) | 13,961,000 (80.95%) |
RIL-10-3-W3dpi_1 | Resistant | WMV-inoculated | 3 | 1 | 41,583,644 | 20,750,266 (49.9%) | 19,102,285 (45.94%) | 17,585,563 (92.06%) |
RIL-10-3-W3dpi_2 | Resistant | WMV-inoculated | 3 | 2 | 43,083,818 | 21,508,031 (49.92%) | 20,350,015 (47.23%) | 19,255,184 (94.62%) |
RIL-10-3-W3dpi_3 | Resistant | WMV-inoculated | 3 | 3 | 43,009,278 | 21,463,096 (49.9%) | 19,980,658 (46.46%) | 18,599,994 (93.09%) |
RIL-10-3-0dpi_1 | Resistant | Uninoculated | 0 | 1 | 40,318,008 | 20,124,842 (49.92%) | 16,545,112 (41.04%) | 13,601,736 (82.21%) |
RIL-10-3-0dpi_2 | Resistant | Uninoculated | 0 | 2 | 43,093,538 | 21,504,205 (49.9%) | 18,964,458 (44.01%) | 16,724,755 (88.19%) |
RIL-10-3-0dpi_3 | Resistant | Uninoculated | 0 | 3 | 59,630,926 | 29,763,672 (49.91%) | 24,909,634 (41.77%) | 20,846,872 (83.69%) |
BO-M3dpi_1 | Susceptible | Mock-inoculated | 3 | 1 | 42,827,098 | 21,369,863 (49.9%) | 17,234,566 (40.24%) | 13,899,677 (80.65%) |
BO-M3dpi_2 | Susceptible | Mock-inoculated | 3 | 2 | 44,335,964 | 22,126,097 (49.91%) | 20,783,260 (46.88%) | 19,521,716 (93.93%) |
BO-M3dpi_3 | Susceptible | Mock-inoculated | 3 | 3 | 43,107,228 | 21,512,325 (49.9%) | 19,343,157 (44.87%) | 17,393,366 (89.92%) |
BO-W3dpi_1 | Susceptible | WMV-inoculated | 3 | 1 | 44,760,600 | 22,335,730 (49.9%) | 20,617,125 (46.06%) | 19,031,668 (92.31%) |
BO-W3dpi_2 | Susceptible | WMV-inoculated | 3 | 2 | 42,045,224 | 20,983,927 (49.91%) | 18,515,499 (44.04%) | 16,338,076 (88.24%) |
BO-W3dpi_3 | Susceptible | WMV-inoculated | 3 | 3 | 43,210,794 | 21,561,209 (49.9%) | 18,021,327 (41.71%) | 15,062,225 (83.58%) |
BO-0dpi_1 | Susceptible | Uninoculated | 0 | 1 | 44,382,722 | 22,152,146 (49.91%) | 19,960,694 (44.97%) | 17,986,581 (90.11%) |
BO-0dpi_2 | Susceptible | Uninoculated | 0 | 2 | 43,609,702 | 21,761,448 (49.9%) | 20,329,692 (46.62%) | 18,991,998 (93.42%) |
BO-0dpi_3 | Susceptible | Uninoculated | 0 | 3 | 40,781,540 | 20,347,309 (49.89%) | 18,602,333 (45.61%) | 17,006,252 (91.42%) |