Table 1 Annotated genes in H. citrina plastomes

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbT, psbL, psbZ, psbM

Small subunit of ribosome

rps2, rps3, rps4, rps7 (2), rps8, rps11, rps12(2), rps14, rps15, rps16^a, rps18, rps19(2),

Large subunit of ribosome

rpl2^a (2), rpl14, rpl16, rpl20, rpl22, rpl23 (2), rpl32, rpl33, rpl36,

NADH dehydrogenase

ndhA^a, ndhB^a (2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Cytochrome b/f complex

PetA, petB^a, petD^a, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF^a, atpH, atpI

RNA polymerase

rpoA, rpoB, rpoC1^a, rpoC2

Large subunit of Rubisco

rbcL

Unknown function

ycf1, ycf 2(2), ycf3^b, ycf4

Cytochrome c biogenesis protein

ccsA

Envelope membrane protein

cemA

Subunit of ATP-dependent Clp

clpP^b

Translation initiation factor

infA

Subunit of acetyl-CoA

AccD

Maturase

matK

30 tRNA genes

Transfer RNA

trnA-UGC^a (2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-UCC^a, trnG-GCC, trnH-GUC, trnH-GUG, trnI-CAU (2), trnI-GAU^a (2), trnK-UUU^a, trnL-CAA (2), trnL-UAA^a, trnL-UAG ^a, trnM-CAU, trnN-GUU (2), trnP-UGG, trnQ-UUG, trnR-ACG (2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC, trnV-UAC^a, trnW-CCA, trnY-GUA,

4 rRNA genes

Ribosomal RNA

4.5S rRNA (2), 5S rRNA (2), 16S rRNA (2), 23S rRNA (2)