Table 1 Significant SNPs detected by different statistic models
Method | SNP | Physical position | Significant region | -log10 (P) | MAF | PVE (phenotypic variance) (%) | ||
|---|---|---|---|---|---|---|---|---|
Chr | Position | Start | End | |||||
GLM | ss715595462 | 6 | 6,851,950 | 6,742,950 | 6,960,950 | 5.70 | 0.09 | 6.70% |
GLM | ss715595463 | 6 | 6,861,034 | 6,752,034 | 6,970,034 | 5.70 | 0.09 | 6.70% |
GLM | ss715595456 | 6 | 6,784,111 | 6,675,111 | 6,893,111 | 4.76 | 0.11 | 5.44% |
GLM | ss715595465 | 6 | 6,885,409 | 6,776,409 | 6,994,409 | 4.76 | 0.11 | 5.44% |
GLM | ss715595455 | 6 | 6,783,932 | 6,674,932 | 6,892,932 | 4.76 | 0.11 | 5.44% |
MLM | ss715595463 | 6 | 6,861,034 | 6,752,034 | 6,970,034 | 5.67 | 0.09 | 6.63% |
MLM | ss715595462 | 6 | 6,851,950 | 6,742,950 | 6,960,950 | 5.67 | 0.09 | 6.63% |
MLM | ss715595455 | 6 | 6,783,932 | 6,674,932 | 6,892,932 | 4.99 | 0.11 | 5.71% |
MLM | ss715595456 | 6 | 6,784,111 | 6,675,111 | 6,893,111 | 4.99 | 0.11 | 5.71% |
MLM | ss715595465 | 6 | 6,885,409 | 6,776,409 | 6,994,409 | 4.99 | 0.11 | 5.71% |
CMLM | ss715595463 | 6 | 6,861,034 | 6,752,034 | 6,970,034 | 5.67 | 0.09 | 6.63% |
CMLM | ss715595462 | 6 | 6,851,950 | 6,742,950 | 6,960,950 | 5.67 | 0.09 | 6.63% |
CMLM | ss715595455 | 6 | 6,783,932 | 6,674,932 | 6,892,932 | 4.99 | 0.11 | 5.71% |
CMLM | ss715595456 | 6 | 6,784,111 | 6,675,111 | 6,893,111 | 4.99 | 0.11 | 5.71% |
CMLM | ss715595465 | 6 | 6,885,409 | 6,776,409 | 6,994,409 | 4.99 | 0.11 | 5.71% |
SUPER | ss715595463 | 6 | 6,861,034 | 6,752,034 | 6,970,034 | 6.95 | 0.09 | NA |
SUPER | ss715595462 | 6 | 6,851,950 | 6,742,950 | 6,960,950 | 6.95 | 0.09 | NA |
SUPER | ss715595456 | 6 | 6,784,111 | 6,675,111 | 6,893,111 | 6.20 | 0.11 | NA |
SUPER | ss715595465 | 6 | 6,885,409 | 6,776,409 | 6,994,409 | 6.20 | 0.11 | NA |
SUPER | ss715595455 | 6 | 6,783,932 | 6,674,932 | 6,892,932 | 6.20 | 0.11 | NA |
SUPER | ss715595467 | 6 | 6,909,916 | 6,800,916 | 7,018,916 | 4.82 | 0.11 | NA |
SUPER | ss715595416 | 6 | 6,441,486 | 6,332,486 | 6,550,486 | 4.64 | 0.07 | NA |
SUPER | ss715595451 | 6 | 6,722,530 | 6,613,530 | 6,831,530 | 4.58 | 0.06 | NA |