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Table 1 List of up-regulated and down-regulated DEGs, GO, and their expression spectrum under bacterial wilt infection

From: Uncovering the transcriptional responses of tobacco (Nicotiana tabacum L.) roots to Ralstonia solanacearum infection: a comparative study of resistant and susceptible cultivars

Gene ID

Gene name

R-6 h

R-1d

R-3d

R-7d

S-6 h

S-1d

S-3d

S-7d

GO terms/Functional annotation

Log2FC

Log2FC

Log2FC

Log2FC

Log2FC

Log2FC

Log2FC

Log2FC

Nitab4.5_0003084g0040

NPF5.7

2.07

2.37

2.92

2.64

3.09

3.46

3.71

4.20

GO:0016020//membrane; GO:0015333//peptide activity; GO:0022857//transmembrane transporter activity

Nitab4.5_0005779g0060

CKX5

2.16

3.43

3.42

2.54

3.40

4.22

4.27

3.53

GO:0005576//extracellular region; GO:0000166//nucleotide binding; GO:0003824//catalytic activity; GO:0005488//GO:0010817//regulation of hormone levels; GO:0071704//organic substance metabolic process

Nitab4.5_0002400g0010

CYP94C1

2.21

2.54

2.04

2.00

2.46

3.11

2.61

2.63

GO:0005506//iron ion binding; GO:0016705//oxidoreductase activity; GO:0020037//heme binding; GO:0055114//oxidation–reduction process

Nitab4.5_0000152g0170

RFS1

2.23

2.55

2.23

5.02

2.19

2.21

2.19

3.74

GO:0016758//transferase activity; GO:0005975//carbohydrate metabolic process; GO:0044238//primary metabolic process

MSTRG.75244

GLP5A

2.90

2.30

3.32

2.85

3.66

2.99

3.67

5.14

GO:0016623//oxidoreductase activity; GO:0046914//transition metal ion binding; GO:0044710//single-organism metabolic process

Nitab4.5_0008666g0010

TIC32B

3.27

5.13

5.64

4.12

2.98

6.40

7.00

5.69

GO:0004757//sepiapterin reductase activity; GO:0050662//coenzyme binding; GO:0051287//NAD binding; GO:0015995//chlorophyll biosynthetic process; GO:0055114//oxidation–reduction process

Nitab4.5_0002337g0010

ATJ11

3.40

3.11

3.40

4.83

2.81

2.97

2.57

3.27

GO:0005515//protein binding; GO:0006457//protein folding; GO:0009408//response to heat

Nitab4.5_0000713g0070

KUA1

4.40

2.47

3.21

8.17

4.50

2.66

3.31

7.64

GO:0005622//intracellular; GO:0005623//cell; GO:0044444//cytoplasmic part; GO:0044464//cell part; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process

Nitab4.5_0003171g0010

PPO

4.58

3.30

3.44

5.78

6.00

5.00

7.01

9.26

GO:0004097//catechol oxidase activity; GO:0016491//oxidoreductase activity; GO:0055114//oxidation–reduction process

Nitab4.5_0000402g0160

10HGO

4.60

4.20

4.40

8.91

3.11

3.26

4.22

5.24

GO:0005737//cytoplasm; GO:0016491//oxidoreductase activity

Nitab4.5_0006169g0020

ZIP3

-2.68

-1.80

-3.26

-3.68

-1.94

-1.38

-1.60

-2.16

GO:0016020//membrane; GO:0046873//metal ion transmembrane transporter activity; GO:0030001//metal ion transport; GO:0055085//transmembrane transport

Nitab4.5_0002377g0030

ERF012

-2.66

-1.06

-1.16

-3.18

-2.60

-1.86

-1.45

-2.71

GO:0005622//intracellular; GO:0003700//transcription factor activity; GO:0005488//binding; GO:0000160//phosphorelay signal transduction system; GO:0006950//response to stress

Nitab4.5_0005061g0040

ERF025

-2.51

-1.59

-1.63

-3.69

-2.55

-1.78

-1.89

-2.70

GO:0003700//transcription factor activity, sequence-specific DNA binding; GO:0006355//regulation of transcription, DNA-templated

Nitab4.5_0002493g0050

ALMT2

-2.21

-2.57

-2.36

-6.24

-2.50

-2.83

-2.85

-5.30

GO:0005886//plasma membrane; GO:0022857//transmembrane transporter activity; GO:0015743//malate transport; GO:0055085//transmembrane transport

Nitab4.5_0001675g0050

XTH16

-2.20

-1.73

-1.44

-5.10

-2.71

-2.75

-1.75

-3.87

GO:0005618//cell wall; GO:0016762//xyloglucosyl transferase activity; GO:0005975//carbohydrate metabolic process

Nitab4.5_0000446g0040

XTH16

-1.83

-1.26

-2.57

-5.97

-2.14

-2.55

-2.33

-5.29

GO:0005618//cell wall; GO:0016762//xyloglucosyl transferase activity; GO:0005975//carbohydrate metabolic process

Nitab4.5_0000158g0100

ALMT2

-1.83

-1.42

-2.48

-3.93

-2.43

-3.10

-3.52

-5.11

GO:0005886//plasma membrane; GO:0022857//transmembrane transporter activity; GO:0015743//malate transport; GO:0055085//transmembrane transport

Nitab4.5_0004777g0030

YUC9

-1.73

-2.09

-1.04

-5.91

-1.82

-2.74

-2.10

-4.24

GO:0004499//N-dimethylaniline monooxygenase activity; GO:0004791//thioredoxin-disulfide reductase activity; GO:0015036//disulfide oxidoreductase activity

Nitab4.5_0000446g0010

XTH16

-1.57

-2.04

-1.93

-5.58

-2.20

-2.84

-2.08

-4.68

GO:0005618//cell wall; GO:0016762//xyloglucosyl transferase activity; GO:0005975//carbohydrate metabolic process

Nitab4.5_0003734g0040

XTH22

-1.34

-1.18

-2.62

-7.36

-1.45

-2.20

-2.011

-4.74

GO:0004553//hydrolase activity, hydrolyzing O-glycosyl compounds; GO:0005975//carbohydrate metabolic process

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BMC Plant Biology

ISSN: 1471-2229

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