BMC Plant Biology

Table 2 Number and distribution of non-synonymous SNPs and frameshift InDels detected on the apple chromosomes in ‘Red Delicious’ and its four generation mutants

From: Whole-genome resequencing and transcriptome analyses of four generation mutants to reveal spur-type and skin-color related genes in apple (Malus domestica Borkh. Cv. Red delicious)

Chr	G0				G1				G2				G3				G4
	Ns	Frameshift			Ns	Frameshift			Ns	Frameshift			Ns	Frameshift			Ns	Frameshift
	Ns	Del	Ins	Sub	Ns	Del	Ins	Sub	Ns	Del	Ins	Sub	Ns	Del	Ins	Sub	Ns	Del	Ins	Sub
Chr0	4,813	73	130	1	4,798	75	128	1	4,764	64	129	2	4,806	73	129	0	4,808	75	182	1
Chr1	7,435	274	231	5	7,420	267	215	5	7,468	252	214	4	7,412	264	222	4	7,421	263	218	6
Chr2	12,753	250	202	4	12,707	246	192	2	12,791	252	172	3	12,721	246	189	4	12,725	247	183	5
Chr3	9,685	151	102	3	9,655	154	108	4	9,659	139	157	4	9,670	158	108	2	9,675	147	118	3
Chr4	7,863	21	26	4	7,859	22	28	0	7,823	25	27	0	7,852	22	25	0	7,866	23	26	0
Chr5	13,170	231	180	0	13,134	226	179	2	13,135	249	196	4	13,130	223	175	3	13,146	224	183	4
Chr6	5,525	142	122	5	5,512	146	117	3	5,507	140	110	1	5,521	141	117	5	5,520	144	115	4
Chr7	10,940	208	148	1	10,939	202	148	2	10,938	217	145	2	10,944	206	140	2	10,939	205	140	3
Chr8	7,565	202	161	0	7,554	187	157	1	7,545	174	131	2	7,551	202	146	2	7,570	193	159	2
Chr9	10,228	260	193	2	10,224	260	192	2	10,080	252	178	1	10,219	260	197	2	10,228	263	197	5
Chr10	10,589	221	180	3	10,587	216	171	3	10,436	230	170	2	10,582	214	214	1	10,583	214	214	4
Chr11	12,650	271	187	3	12,631	249	180	4	12,544	268	181	2	12,622	254	183	3	12,638	253	182	3
Chr12	8,389	223	165	4	8,384	221	166	2	8,320	210	165	1	8,387	226	155	3	8,382	221	165	6
Chr13	7,997	218	140	4	7,994	217	139	8	7,962	206	130	3	7,991	207	139	9	7,993	215	142	6
Chr14	7,743	185	152	5	7,743	179	150	1	7,657	166	141	1	7,742	171	156	2	7,744	193	151	1
Chr15	14,658	319	248	5	14,621	313	237	6	14,593	365	273	7	14,638	318	239	6	14,634	315	242	7
Chr16	8,343	153	108	2	8,336	152	104	2	8,375	142	96	1	8,334	151	105	1	8,334	154	108	5
Chr17	9,001	189	107	1	8,977	187	109	3	8,900	183	106	2	8,993	193	108	1	8,983	185	107	2

Note: G0, G1, G2, G3 and G4 represent ‘Red Delicious’, ‘Starking red’, ‘Starkrimson’, ‘Campbell Redchief’ and ‘Vallee spur’, respectively. Chr, Chromosome; Ns, Non-synonymous; Del, Deletion; Ins, Insertion; Sub, Substitution

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ISSN: 1471-2229

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