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Fig. 6 | BMC Plant Biology

Fig. 6

From: Whole-genome resequencing and transcriptome analyses of four generation mutants to reveal spur-type and skin-color related genes in apple (Malus domestica Borkh. Cv. Red delicious)

Fig. 6

Analysis of structural variants DEGs associated with spur-type and skin-color. G0, G1, G2, G3 and G4 represent ‘Red Delicious’, ‘Starking red’, ‘Starkrimson’, ‘Campbell Redchief’ and ‘Vallee spur’, respectively. a Specific SNP and InDel variation genes were shown in blue and red in five samples, respectively. b KEGG enrichment analysis of 4,356 genes. The X-axis indicates GeneRatio. The size of the bubble represents the number of genes, and the color of the bubble from purple to red indicates the smaller pvalue and the greater of significance. The KEGG pathway map was sourced from KEGG Mapper (https://www.kegg.jp/kegg/mapper/), and we have obtained written permission to use and adapt it [25,26,27]. c Expression levels of 13 genes related to spur-type. d Expression levels of 16 genes related to skin-color. Gene expression levels were calculated by using log2 FPKM values, and red and blue represents up-regulated and down-regulated genes, respectively

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BMC Plant Biology

ISSN: 1471-2229

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