Table 3 SNP associated (-log₁₀ P-value ≥ 4) with bean rust disease severity scored 12 days after infection, their position within bean chromosomes, allelic reference and variant for each SNP, the frequency and effect of the variant allele, and the amount of phenotypic variance explained by each SNP associated with DS transf (BLUEs) in the common bean collection. Results are shown for two association mappings after removal of the 16 accessions showing mixed reactions: one with all the remaining accessions except the six considered incomplete hypersensitive resistant (to identify genes controlling partial resistance), and the other with all the remaining accessions except the 20 partially resistant (to detect genes controlling for incomplete hypersensitive resistance). All 11 associations were significant according to the Benjamini-Yekutieli (BY) FDR test

From: Identification of novel sources of partial and incomplete hypersensitive resistance to rust and associated genomic regions in common bean