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Table 2 Upregulated DEGs (DeS vs. GeS) in pathway phosphatidylinositol signaling system (map04070) and MAPK signaling pathway-plant (map04016)

From: Combined transcriptome and proteome analysis reveal the key physiological processes in seed germination stimulated by decreased salinity in the seagrass Zostera marina L.

Gene name

Gene description

Log2FC

(GeS/DeS)

Pvalue

Significant

Regulate

Phosphatidylinositol signaling system (map04070)

Zosma06g17200

Calcium-binding protein CML30-related

5.95

7.71E-96

yes

up

Zosma01g17380

Phosphoinositide phospholipase C

2.11

3.86E-74

yes

up

Zosma06g21480

Phosphatidylinositol phospholipase C, delta (PLCD)

1.60

8.04E-68

yes

up

Zosma06g22670

Inositol-phosphate phosphatase

2.39

9.23E-43

yes

up

Zosma04g23450

1-Phosphatidylinositol-3-phosphate 5-kinase

1.86

2.37E-24

yes

up

Zosma06g25910

Calcium-binding protein CML (CML)

1.85

6.92E-21

yes

up

Zosma02g16920

Phosphatidylinositol 4-phosphate 5-kinase 1-related

1.25

2.85E-17

yes

up

Zosma02g04740

1-Phosphatidylinositol-3-phosphate 5-kinase (PIKFYVE, FAB1)

1.05

5.80E-16

yes

up

Zosma01g17310

Phosphoinositide phospholipase C

1.14

2.88E-12

yes

up

Zosma01g17240

Phosphoinositide phospholipase C

4.00

6.01E-12

yes

up

Zosma01g17400

Phospholipase C

1.43

5.68E-08

yes

up

Zosma04g21910

Diacylglycerol kinase 5-related

1.20

6.60E-06

yes

up

Zosma01g12110

EF-Hand calcium-binding domain containing protein

2.15

6.72E-06

yes

up

MAPK signaling pathway-plant (map04016)

Zosma05g03810

WRKY transcription factor 22

4.75

4.85E-166

yes

up

Zosma06g17200

Calcium-binding protein CML30-related

5.95

7.71E-96

yes

up

Zosma06g09020

Protein phosphatase 2 C

2.70

2.19E-74

yes

up

Zosma04g23910

Transcription factor VIP1

1.95

2.04E-64

yes

up

Zosma03g01510

Mitogen-activated protein kinase 1/3 (MAPK1_3)

1.73

3.67E-54

yes

up

Zosma06g26970

WRKY transcription factor 25-related

4.25

1.15E-52

yes

up

Zosma01g16060

Protein phosphatase 2 C (PP2C)

2.97

1.84E-26

yes

up

Zosma02g01750

VQ motif

2.96

3.48E-26

yes

up

Zosma02g07340

WRKY transcription factor 1-related

4.48

9.39E-25

yes

up

Zosma06g25910

Calcium-binding protein CML (CML)

1.85

6.92E-21

yes

up

Zosma02g23050

Respiratory burst oxidase (RBOH)

5.09

1.31E-14

yes

up

Zosma03g19400

Mitogen-activated protein kinase kinase 4/5, plant (MKK4_5P)

1.04

8.35E-13

yes

up

Zosma03g14010

Mitogen-activated protein kinase

5.96

6.31E-09

yes

up

Zosma03g00810

Mitogen-activated protein kinase kinase

7.57

3.71E-08

yes

up

Zosma01g03460

Mitogen-activated protein kinase kinase

3.27

1.57E-07

yes

up

Zosma06g01320

Abscisic acid receptor PYL1-related

1.37

1.98E-06

yes

up

Zosma03g35940

Nucleoside-diphosphate kinase (ndk, NME)

2.15

6.45E-06

yes

up

Zosma01g12110

EF-Hand calcium-binding domain containing protein

2.15

6.72E-06

yes

up

Zosma05g07070

AGC (CAMP-dependent, CGMP-dependent and protein kinase C) kinase family protein-related

1.74

1.10E-05

yes

up

Zosma04g05340

Mitogen-activated protein kinase

1.09

1.27E-04

yes

up

Zosma05g10360

Transcription factor MYC3-related

5.38

5.98E-04

yes

up