Table 4 QTL x environment interaction estimated for yield and its contributing traits evaluated across the environments created under rainfed situation

Plant height

qPH.2B.1

2B

11

2B_3291748–2B_1636089

3.56

2.62

0.94

11.42

6.88

4.54

-4.31

3.5–15.5

qPH.3B.1

3B

119

3B_19151635–3B_18990496

3.58

0.70

2.87

10.66

2.83

7.82

2.05

116.5–119.5

Primary branches/plant

qPB.3B.1

3B

69

3B_8677419–3B_8677464

3.05

0.04

3.01

28.67

0.53

28.14

0.03

67.5–73.5

Secondary

Branches/plant

qSB.3B.1

3B

27

3B_15825638–3B_12057245

3.68

1.87

1.81

19.55

9.30

10.25

0.57

26.5–29.5

qSB.3B.2

3B

58

3B_65754767–3B_63675862

4.3

0.04

4.26

17.41

0.05

17.35

-0.13

57.5–58.5

qSB.5A.1

5A

48

5A_7330303–5A_8808015

3.45

0.69

2.76

17.36

3.82

13.54

0.96

47.5–49.5

Main shoot length

qMSL.3B.1

3B

104

3B_9101086–3B_22690875

4.05

3.40

0.66

10.53

7.80

2.70

-2.79

98.5–110.5

qMSL.3B.2

3B

224

3B_59798024–3B_16518040

3.15

0.01

3.14

11.00

1.10

9.90

-0.08

218.5–237.5

qMSL.6A.1

6A

122

6A_38048376–6A_39119449

4.76

4.11

0.65

10.20

9.21

0.99

3.04

116.5–122

Siliqua length

qSL.2B.1

2B

64

2B_65115276–2B_64577224

8.82

8.16

0.66

10.04

10.00

0.04

0.24

63.5–64.5

qSL.7A.1

7A

26

7A_22615478–7A_17513851

4.57

4.38

0.19

6.23

6.19

0.04

0.57

24.5–27.5

qSL.8A.1

8A

22

8A_22681841–8A_2967198

4.00

3.34

0.67

3.71

3.50

0.21

0.29

20.5–23.5

qSL.8A.2

8A

27

8A_3395566–8A_3395574

4.06

3.82

0.24

4.26

3.55

0.70

0.32

26.5–27.5

qSL.9A.1

9A

24

9A_38513927–9A_5962669

5.33

4.83

0.50

6.11

6.08

0.03

0.61

23.5–24.5

qSL.1B.1

1B

106

1B_57398572–1B_2361130

3.54

3.26

0.28

2.65

2.65

0.00

0.19

104.5–109.5

qSL.3B.1

3B

112

3B_22690875–3B_19151635

3.20

3.00

0.20

2.59

2.46

0.13

-0.13

100.5–121.5

qSL.3B.2

3B

238

3B_16490510–3B_15005559

4.55

4.51

0.04

3.75

3.59

0.16

-0.20

232.5–240.5

qSL.4B.1

4B

57

4B_57678828–4B_6261023

4.02

3.37

0.66

2.90

2.86

0.05

0.14

50.5–60.5

qSL.6B.1

6B

150

6B_3716052–6B_7548078

3.38

3.03

0.36

2.80

2.43

0.37

0.13

145.5–151.5

Seeds/siliqua

qSS.9A.1

9A

24

9A_38513927–9A_5962669

6.95

6.8

0.15

10.82

10.42

0.40

2.53

23.5–24.5

qSS.7A.1

7A

24

7A_22615478–7A_17513851

3.65

3.46

0.19

4.31

4.26

0.04

1.11

18.5–27.5

qSS.8B.1

8B

86

8B_9276009–8B_3535762

3.12

3.10

0.02

3.25

3.20

0.05

-0.45

74.5–86.0

Seed yield/plant

qSY.3B.2

3B

108

3B_22690875–3B_19151635

6.25

3.84

2.41

7.88

7.57

0.31

-1.79

104.5–114.5

Biological yield/ plant

qBY.3A.1

3A

87

3A_2676786–3A_2045625

4.52

0.59

3.93

4.37

1.30

3.08

4.80

85.5–87.5

qBY.3B.1

3B

20

3B_60523215–3B_58467664

3.21

1.01

2.21

3.59

2.20

1.38

3.96

16.5–21.5

qBY.3B.2

3B

104

3B_9101086–3B_22690875

8.41

3.35

5.07

8.74

7.49

1.25

-5.68

99.5–109.5

1,000 seed weight

qTSW.3B.2

3B

243

3B_16490510–3B_15005559

6.75

5.75

1.00

13.73

10.41

3.32

-0.26

239.5–245.5

qTSW.6B.1

6B

120

6B_17473921–6B_17473911

5.47

5.08

0.39

10.24

9.40

0.84

0.20

113.5–125.5

qTSW.3A.1

3A

61

3A_22246594–3A_10271312

3.38

3.32

0.06

6.01

5.74

0.27

0.19

58.5–65.5

qTSW.5A.1

5A

1

5A_29328695–5A_29019992

3.31

2.49

0.82

5.44

5.39

0.05

-0.75

0–1.5

Oil content (%)

qOL.3A.1

3A

47

3A_2645497–3A_22246594

4.54

4.35

0.19

4.73

4.67

0.07

0.78

40.5–52.5

qOL.8A.1

8A

48

8A_16951000–8A_1068464

5.67

5.46

0.21

6.12

5.87

0.25

-0.85

45.5–49

qOL.10A.1

10A

28

10A_18208177–10A_17921440

3.09

2.74

0.35

3.08

2.89

0.19

0.58

14.5–42.5

qOL.2B.1

2B

40

2B_54313137–2B_54313158

3.09

3.04

0.05

3.53

3.42

0.11

-1.91

39.5–41.5

qOL.5B.1

5B

28

5B_291261–5B_54290

4.33

4.17

0.16

4.46

4.39

0.06

-1.49

27.5–28.5

qOL.6B.1

6B

181

6B_8989606–6B_9051954

3.82

3.58

0.24

3.76

3.68

0.07

-0.85

179.5–181

qOL.7B.1

7B

23

7B_34135672–7B_48748636

3.08

2.57

0.51

2.71

2.62

0.10

-0.75

21.5–25.5

qOL.7B.2

7B

86

7B_36243896–7B_37982990

3.01

2.36

0.66

2.79

2.67

0.12

-1.03

85.5–86.5

Days to 50% flowering

qDF.3A.1

3A

32

3A_2645497–3A_22246594

3.62

3.38

0.23

6.30

4.94

1.36

1.19

28.5–40.5

qDF.1B.1

1B

71

1B_56351113–1B_30563611

5.26

3.05

2.21

6.10

5.63

0.47

2.15

69.5–72.5

qDF.2B.1

2B

46

2B_58470758–2B_58202895

4.77

4.14

0.64

7.82

6.52

1.29

-2.07

45.5–46.5

qDF.3B.1

3B

118

3B_19151635–3B_18990496

5.13

4.13

0.99

7.60

6.28

1.31

1.41

114.5–119.5

qDF.3B.2

3B

234

3B_59798024–3B_16518040

4.02

3.66

0.36

6.59

5.40

1.19

1.49

223.5–240.5

qDF.5B.1

5B

8

5B_51917617–5B_48146581

3.23

2.78

0.45

6.31

3.76

2.55

2.64

7.5–10.5

qDF.6B.1

6B

77

6B_18597429–6B_13740232

3.63

2.73

0.90

4.97

4.14

0.84

-1.17

64.5–80.5

qDF.7B.1

7B

49

7B_49935609–7B_49542209

4.00

3.66

0.35

6.93

5.49

1.44

-1.23

47.5–56.5

Days to maturity

qDM.3B.1

3B

119

3B_19151635–3B_18990496

4.34

4.22

0.12

12.21

8.74

3.47

1.21

116.5–119.5

qDM.2B.1

2B

48

2B_58202892–2B_64284809

3.30

3.20

0.10

8.38

5.65

2.74

-1.28

45.5–56.5

qDM.7B.1

7B

49

7B_49935609–7B_49542209

3.87

3.44

0.43

7.49

6.64

0.86

-0.98

47.5–55.5

qDM.8B.1

8B

21

8B_69572176–8B_69572249

3.26

1.05

2.22

4.32

2.08

2.23

0.82

20.5–22.5