Table 1 Summary of ARF, Aux/IAA and GH3 gene families in sweet potato
Name | Gene ID | Chromosome Location | Chromosome Position | Strand | CDS length | Protein Length (a.a.) | MW (kDa) | pI | Subcellular Location | No. of exons | Domain |
|---|---|---|---|---|---|---|---|---|---|---|---|
IbARF1 | g59391 | LG14 | 28394145–28400481 | +  | 2457 | 818 | 91.36 | 6.13 | nucleus | 15 | DBD, ARF, CTD |
IbARF2 | g8727 | LG2 | 33246806–33251837 | +  | 2079 | 692 | 75.91 | 6.46 | nucleus | 3 | DBD, ARF |
IbARF3 | g34371 | LG9 | 2235070–2241480 | - | 2109 | 702 | 79.04 | 6.29 | nucleus | 15 | DBD, ARF, CTD |
IbARF4 | g4753 | LG2 | 3852087–3857844 | +  | 2529 | 842 | 92.89 | 7.07 | nucleus | 12 | DBD, ARF, CTD |
IbARF5 | g41733 | LG11 | 2388778–2397000 | +  | 2769 | 922 | 102.15 | 5.17 | nucleus | 14 | DBD, ARF, CTD |
IbARF6 | g37210 | LG9 | 23717784–23728660 | +  | 2982 | 993 | 109.64 | 6.44 | nucleus | 17 | DBD, ARF, CTD |
IbARF7 | g60744 | LG15 | 5404732–5414608 | +  | 3102 | 1033 | 114.46 | 6.34 | nucleus | 17 | DBD, ARF, CTD |
IbARF8 | g29590 | LG7 | 31355826–31362577 | - | 2658 | 885 | 98.42 | 6.16 | nucleus | 15 | DBD, ARF, CTD |
IbARF9 | g35069 | LG9 | 7162131–7166778 | - | 1953 | 650 | 72.31 | 6.78 | nucleus | 15 | DBD, ARF, CTD |
IbARF10 | g48029 | LG12 | 8572118–8578621 | +  | 2412 | 803 | 89.26 | 5.66 | nucleus | 12 | DBD, ARF, CTD |
IbARF11 | g35353 | LG9 | 9203658–9208674 | +  | 2559 | 852 | 94.34 | 6.40 | nucleus | 14 | DBD, ARF, CTD |
IbARF12 | g499 | LG1 | 2741507–2747778 | - | 2445 | 814 | 90.66 | 5.84 | nucleus | 14 | DBD, ARF |
IbARF13 | g47890 | LG12 | 7475602–7480416 | +  | 1992 | 663 | 72.89 | 6.42 | nucleus | 6 | DBD, ARF |
IbARF14 | g59133 | LG14 | 26832217–26837751 | +  | 2205 | 734 | 80.66 | 6.44 | nucleus | 11 | DBD, ARF |
IbARF15 | g34554 | LG9 | 3395918–3400037 | - | 1824 | 607 | 66.50 | 6.50 | nucleus | 11 | DBD, ARF |
IbARF16a | g31604 | LG8 | 8196879–8205281 | +  | 2343 | 780 | 86.97 | 5.92 | nucleus | 14 | DBD, ARF, CTD |
IbARF16b | g31598 | LG8 | 8143819–8152148 | +  | 2187 | 728 | 80.62 | 8.57 | nucleus | 16 | DBD, ARF, CTD |
IbARF17 | g32239 | LG8 | 13517466–13524143 | +  | 2268 | 755 | 83.52 | 5.38 | nucleus | 16 | DBD, ARF, CTD |
IbARF18 | g54977 | LG13 | 27141643–27145793 | - | 1920 | 639 | 70.99 | 6.49 | nucleus | 5 | DBD, ARF, CTD |
IbARF19 | g47893 | LG12 | 7535283–7542098 | - | 2763 | 920 | 102.27 | 8.33 | nucleus | 7 | DBD, ARF |
IbARF20 | g48000 | LG12 | 8299289–8306959 | +  | 2550 | 849 | 94.72 | 7.25 | nucleus | 8 | DBD, ARF |
IbARF21 | g55041 | LG13 | 27543052–27548748 | - | 3285 | 1094 | 121.78 | 6.14 | nucleus | 16 | DBD, ARF, CTD |
IbARF22 | g42441 | LG11 | 7199686–7206641 | - | 3174 | 1057 | 116.39 | 5.98 | nucleus | 17 | DBD, ARF, CTD |
IbARF23 | g19483 | LG5 | 21129257–21141322 | - | 1797 | 598 | 67.12 | 6.09 | nucleus | 16 | DBD, ARF, CTD |
IbARF24 | g52627 | LG13 | 10559464–10564889 | - | 2538 | 845 | 94.74 | 6.78 | nucleus | 16 | DBD, ARF, CTD |
IbARF25 | g52675 | LG13 | 11072641–11078076 | +  | 2628 | 875 | 97.90 | 7.19 | nucleus | 15 | DBD, ARF, CTD |
IbARF26 | g4723 | LG2 | 3675472–3679198 | +  | 2172 | 723 | 79.90 | 6.83 | nucleus | 5 | DBD, ARF |
IbARF27 | g59859 | LG15 | 3884–8941 | - | 1650 | 549 | 60.40 | 8.25 | nucleus | 5 | DBD, ARF |
IbARF28 | g60835 | LG15 | 6072825–6076451 | - | 2106 | 701 | 77.53 | 6.25 | nucleus | 4 | DBD, ARF |
IbIAA1 | g5344 | LG2 | 7548551–7549530 | +  | 582 | 193 | 21.74 | 7.58 | nucleus | 2 | I, II, III, IV |
IbIAA2 | g13864 | LG4 | 7640002–7641426 | - | 585 | 194 | 21.44 | 5.17 | nucleus | 3 | I, II, III, IV |
IbIAA3 | g8426 | LG2 | 31203957–31205084 | +  | 570 | 189 | 21.05 | 5.01 | nucleus | 3 | I, II, III, IV |
IbIAA4 | g13218 | LG4 | 3046681–3049178 | +  | 714 | 237 | 26.61 | 5.35 | nucleus | 4 | I, II, III, IV |
IbIAA5a | g51202 | LG13 | 267777–271437 | - | 540 | 179 | 19.89 | 8.34 | nucleus | 3 | I, II, III, IV |
IbIAA5b | g51419 | LG13 | 1936588–1940243 | - | 435 | 144 | 15.99 | 5.78 | nucleus | 3 | I, II, III |
IbIAA6a | g13174 | LG4 | 2739813–2742554 | - | 522 | 173 | 26.68 | 8.16 | nucleus | 5 | I, II, III, IV |
IbIAA6b | g13217 | LG4 | 3025484–3028187 | - | 738 | 245 | 26.82 | 8.46 | nucleus | 5 | I, II, III, IV |
IbIAA7 | g9596 | LG3 | 1184368–1187595 | +  | 729 | 242 | 26.08 | 7.68 | nucleus | 5 | I, II, III, IV |
IbIAA8 | g29122 | LG7 | 28177690–28182077 | - | 1164 | 387 | 41.55 | 8.76 | nucleus | 5 | I, II, III, IV |
IbIAA9 | g42000 | LG11 | 3987793–3991826 | - | 1032 | 343 | 37.45 | 5.83 | nucleus | 6 | I, II, III, IV |
IbIAA10a | g4276 | LG2 | 658186–659812 | +  | 354 | 117 | 12.97 | 5.80 | nucleus | 1 | IV |
IbIAA10b | g62815 | LG15 | 21458790–21461191 | +  | 1341 | 446 | 49.63 | 6.44 | nucleus | 5 | IV |
IbIAA11 | g9720 | LG3 | 1981869–1983222 | +  | 462 | 153 | 17.56 | 4.75 | nucleus | 5 | IV |
IbIAA12 | g8241 | LG2 | 29885957–29888887 | - | 828 | 275 | 29.32 | 6.85 | nucleus | 5 | I, II, III, IV |
IbIAA13 | g13071 | LG4 | 2091248–2097890 | - | 798 | 265 | 29.04 | 9.42 | nucleus | 5 | I, II, III, IV |
IbIAA14 | g8424 | LG2 | 31190293–31193241 | - | 714 | 237 | 26.41 | 6.35 | nucleus | 4 | I, II, III, IV |
IbIAA15a | g51198 | LG13 | 232831–238007 | - | 621 | 206 | 23.00 | 9.31 | nucleus | 5 | I, II, III, IV |
IbIAA15b | g51416 | LG13 | 1910063–1911483 | - | 621 | 206 | 23.05 | 9.03 | nucleus | 5 | I, II, III, IV |
IbIAA16 | g56225 | LG14 | 5951428–5956751 | - | 681 | 226 | 24.38 | 7.64 | nucleus | 5 | I, II, III, IV |
IbIAA17 | g13867 | LG4 | 7684447–7687687 | +  | 711 | 236 | 26.01 | 7.59 | nucleus | 5 | I, II, III, IV |
IbIAA18 | g31376 | LG8 | 6690272–6692986 | - | 960 | 319 | 35.31 | 9.04 | nucleus | 5 | I, II, III, IV |
IbIAA19 | g9605 | LG3 | 1275466–1278690 | +  | 834 | 277 | 29.92 | 6.97 | nucleus | 6 | I, II, III, IV |
IbIAA20a | g31897 | LG8 | 10676014–10678517 | - | 597 | 198 | 22.58 | 5.44 | nucleus | 4 | II, III, IV |
IbIAA20b | g62057 | LG15 | 15608986–15612217 | +  | 594 | 197 | 22.58 | 5.59 | nucleus | 4 | II, III, IV |
IbIAA20c | g62205 | LG15 | 16828836–16831596 | +  | 594 | 197 | 22.49 | 5.32 | nucleus | 4 | II, III, IV |
IbIAA21 | g55517 | LG14 | 1049110–1050985 | - | 1185 | 394 | 44.53 | 9.14 | nucleus | 5 | III, IV |
IbIAA22 | g39034 | LG10 | 6134522–6138092 | - | 1146 | 381 | 41.29 | 6.28 | nucleus | 7 | I, II, III, IV |
IbIAA23 | g21833 | LG6 | 7312394–7314366 | +  | 429 | 142 | 16.01 | 5.02 | nucleus | 3 | II, III |
IbIAA24 | g19769 | LG5 | 23440642–23443051 | +  | 975 | 324 | 35.54 | 8.09 | nucleus | 8 | I, II, III, IV |
IbIAA25 | g55269 | LG13 | 28900889–28902722 | - | 762 | 253 | 27.78 | 5.32 | nucleus | 3 | I, II, III |
IbIAA26 | g61025 | LG15 | 7370833–7373179 | - | 606 | 201 | 21.87 | 5.32 | nucleus | 4 | II, III, IV |
IbIAA27 | g55286 | LG13 | 29005161–29007909 | - | 1077 | 358 | 38.26 | 4.89 | nucleus | 5 | I, II, III, IV |
IbIAA28 | g21443 | LG6 | 4380350–4382045 | +  | 762 | 253 | 27.84 | 6.16 | nucleus | 4 | I, II, III, IV |
IbIAA29 | g21732 | LG6 | 6736576–6739075 | - | 585 | 194 | 22.33 | 6.44 | nucleus | 4 | III |
IbIAA30 | g21733 | LG6 | 6746443–6748745 | - | 732 | 243 | 28.24 | 8.25 | nucleus | 5 | II, III |
IbIAA31 | g36618 | LG9 | 18867423–18871633 | +  | 618 | 205 | 23.50 | 5.93 | nucleus | 4 | II, IV |
IbIAA32 | g21837 | LG6 | 7342737–7344682 | - | 666 | 221 | 25.35 | 8.42 | nucleus | 4 | II, III, IV |
IbIAA33 | g16695 | LG5 | 635787–636498 | - | 447 | 148 | 16.40 | 9.30 | nucleus | 2 | III, IV |
IbGH3.1 | g59630 | LG14 | 29651724–29654131 | - | 1797 | 598 | 66.44 | 5.43 | plasma membrane, cytoplasm, nucleus | 3 | - |
IbGH3.2 | g29011 | LG7 | 27375147–27377604 | +  | 1800 | 599 | 66.92 | 5.95 | nucleus | 3 | - |
IbGH3.3 | g28936 | LG7 | 26815115–26817524 | +  | 1311 | 436 | 48.89 | 9.03 | nucleus | 6 | - |
IbGH3.4 | g30915 | LG8 | 3596734–3599918 | +  | 1671 | 556 | 63.18 | 5.78 | plasma membrane, cytoplasm | 4 | - |
IbGH3.5 | g54101 | LG13 | 21665190–21667469 | - | 1815 | 604 | 68.20 | 6.62 | nucleus | 3 | - |
IbGH3.6 | g61115 | LG15 | 7968829–7971680 | +  | 1689 | 562 | 63.31 | 5.61 | cytoplasm, nucleus | 6 | - |
IbGH3.7 | g30914 | LG8 | 3588634–3590995 | +  | 1803 | 600 | 67.59 | 5.85 | plasma membrane, nucleus | 3 | - |
IbGH3.8 | g30916 | LG8 | 3600274–3605749 | +  | 2064 | 687 | 77.46 | 5.59 | plasma membrane | 4 | - |
IbGH3.9 | g49834 | LG12 | 21853291–21859368 | +  | 1848 | 615 | 69.04 | 5.74 | plasma membrane, nucleus | 4 | - |
IbGH3.10 | g54418 | LG13 | 23757464–23761208 | - | 1725 | 574 | 65.15 | 6.25 | cytoplasm, nucleus | 5 | - |
IbGH3.11 | g9512 | LG3 | 515790–518455 | - | 1422 | 473 | 52.71 | 5.21 | cytoplasm, chloroplast | 4 | - |
IbGH3.12 | g56407 | LG14 | 7163225–7172836 | +  | 1962 | 653 | 72.88 | 7.45 | plasma membrane | 7 | - |
IbGH3.13 | g56453 | LG14 | 7568229–7572565 | - | 1893 | 630 | 70.46 | 6.59 | plasma membrane, cytoplasm | 6 | - |