Table 2 Frequency of predicted canonical and non-canonical donor splice sites. Splice site occurrences are based on existing gene models predictions for Trema orientalis, Parasponia andersonii, Lotus japonicus, Medicago truncatula and Arabidopsis thaliana
T. orientalis | P. andersonii | M.truncatula | L. japonicus | A. thaliana | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
Splice motif | Total | % | Total | % | Total | % | Total | % | Total | % |
GT-AG | 102,107 | 98.09% | 100,852 | 98.36% | 213,612 | 95.94% | 148,570 | 97.99% | 159,839 | 98.80% |
GC-AG | 537 | 0.52% | 567 | 0.55% | 8962 | 4.03% | 2193 | 1.45% | 1742 | 1.08% |
AT-AC | 13 | 0.01% | 14 | 0.01% | 79 | 0.04% | 656 | 0.43% | 90 | 0.06% |
GA-AG | 11 | 0.01% | 8 | 0.01% | 0 | 0.00% | 6 | 0.00% | 14 | 0.01% |
Others | 1426 | 1.37% | 1096 | 1.07% | 0 | 0.00% | 190 | 0.13% | 89 | 0.06% |
Canonical | 102,107 | 98.09% | 100,852 | 98.36% | 213,612 | 95.94% | 148,570 | 97.99% | 159,839 | 98.80% |
Non-canonical | 1987 | 1.91% | 1685 | 1.64% | 9041 | 4.06% | 3045 | 2.01% | 1935 | 1.20% |
Grand Total | 104,094 | 100.00% | 102,537 | 100.00% | 222,653 | 100.00% | 151,615 | 100.00% | 161,774 | 100.00% |