Table 1 Splicing efficiency of Trema orientalis and Parasponia andersonii SYMRK in the root susceptible zone for symbiotic engagement
SYMRK | T. orientalis | root susceptible zone | P. andersonii | root susceptible zone | ||
|---|---|---|---|---|---|---|
length (bp) | coverage | s.d | length (bp) | coverage | s.d | |
exon1 | 99 | 28.1 | 8.9 | 99 | 94.6 | 39.6 |
intron1 | 765 | 0.0 | 0.1 | 912 | 0.1 | 0.1 |
exon2 | 525 | 35.2 | 13.2 | 525 | 96.5 | 17.6 |
intron2 | 339 | 0.0 | 0.0 | 341 | 0.1 | 0.2 |
exon3 | 475 | 51.2 | 9.1 | 475 | 114.6 | 17.1 |
intron3 | 351 | 0.0 | 0.0 | 364 | 0.0 | 0.0 |
exon4 | 150 | 59.3 | 23.4 | 150 | 127.0 | 24.9 |
intron4 | 188 | 0.1 | 0.1 | 175 | 0.1 | 0.2 |
exon5 | 71 | 89.2 | 27.6 | 71 | 166.1 | 29.4 |
intron5 | 103 | 0.3 | 0.2 | 102 | 1.0 | 0.7 |
exon6 | 68 | 84.4 | 20.7 | 68 | 133.1 | 22.2 |
intron6 | 202 | 2.7 | 0.5 | 319 | 0.2 | 0.2 |
exon7 | 71 | 70.7 | 18.3 | 71 | 125.0 | 13.2 |
intron7 | 133 | 0.0 | 0.0 | 134 | 0.3 | 0.4 |
exon8 | 71 | 62.2 | 16.9 | 71 | 138.8 | 15.5 |
intron8 | 97 | 0.9 | 1.1 | 86 | 0.1 | 0.1 |
exon9 | 193 | 76.1 | 16.1 | 193 | 142.9 | 22.8 |
intron9 | 98 | 1.9 | 0.6 | 98 | 0.9 | 0.9 |
exon10 | 235 | 79.6 | 13.5 | 235 | 155.3 | 18.6 |
intron10 | 83 | 0.1 | 0.1 | 90 | 0.3 | 0.6 |
exon11 | 126 | 100.8 | 13.3 | 126 | 158.0 | 35.0 |
intron11 | 65 | 1.3 | 1.9 | 83 | 10.5 | 4.3 |
exon12 | 86 | 91.8 | 19.3 | 86 | 158.9 | 34.5 |
intron12 | 118 | 4.6 | 1.0 | 118 | 0.2 | 0.3 |
exon13 | 189 | 109.4 | 13.8 | 189 | 159.3 | 16.9 |
intron13 | 276 | 1.6 | 1.0 | 273 | 0.7 | 0.6 |
exon14 | 132 | 155.1 | 7.4 | 132 | 255.8 | 22.9 |
intron14 | 112 | 4.2 | 4.3 | 112 | 0.4 | 0.7 |
exon15 | 326 | 135.4 | 9.4 | 326 | 207.6 | 13.0 |