Table 2 Genes annotated in the N. pallida chloroplast genome grouped by category and functional group
Category | Functional group | Annotated genes |
|---|---|---|
Transcription and translation | Large subunit of ribosomal proteins | rpl2”*, rpl14, rpl16*, rpl20, rpl23”, rpl32, rpl33, rpl36 |
Small subunit of ribosomal proteins | rps2, rps3, rps4, rps7”, rps8, rps11, rps12”*, rps14, rps15, rps16*, rps18, rps19 | |
DNA dependent RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 | |
Translation | infA | |
rRNA | rrn4.5″, rrn5”, rrn16”, rrn23” | |
tRNA | trnA-UGC”*, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC*, trnG-UCC, trnH-GUG, trnI-CAU”, trnI-GAU”*, trnK-UUU*, trnL-CAA”, trnL-UAA*, trnL-UAG, trnfM-CAU, trnM-CAU”, trnN-GUU”, trnP-GGG, trnP-UGG, trnQ-UUG, trnR-ACG”, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC”, trnV-UAC*, trnW-CCA, trnY-GUA | |
Photosynthesis | Photosystem I | psaA, psaB, psaC, psaI, psaJ |
Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
NADH dehydrogenase | ndhA*, ndhB”*, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
Cytochrome b6/f complex | petA, petB*, petD*, petG, petL, petN | |
ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI | |
Rubisco | rbcL | |
Other genes | Maturase | matK |
Protease | clpP* | |
Envelope membrane protein | cemA | |
Subunit Acetyl-CoA-Carboxylase | accD | |
c-type cytochrome synthesis gene | ccsA | |
Unknown | Conserved Open reading frames | ycf1”, ycf2”, ycf3*, ycf4 |