Table 3 Hierarchical clustering of highly enriched genes using gene set enrichment score and kappa coefficient at molecular function. The kappa coefficient is the de facto standard to evaluate the agreement between raters, which factors out expected agreement due to chance. Kappa value: Very High (0.75–1), High (0.5–0.75), Moderate (0.25–0.5) and Low (< 0.25)
Cluster | Gene ID | Gene Name | Kappa value | Kappa value term |
|---|---|---|---|---|
Cluster 1: Enrichment Score: 1.33 | 4339974 | dehydration-responsive element-binding protein 1C | 0.83 | Very high |
4347620 | dehydration-responsive element-binding protein 1A-like | 0.8 | Very high | |
4324418 | dehydration-responsive element-binding protein 2A-like | 0.695 | High | |
4334553 | NAC domain-containing protein 2-like | 0.64 | High | |
4344714 | AT-hook motif nuclear-localized protein 23) | 0.64 | High | |
4324824 | WUSCHEL-related homeobox 9-like | 0.59 | High | |
4330838 | bZIP transcription factor 23-like | 0.59 | High | |
4326871 | ocs element-binding factor 1 | 0.5 | High | |
Cluster 2: Enrichment Score: 0.78 | 4333169 | uncharacterized | 0.92 | Very high |
4333878 | uncharacterized | 0.85 | Very high | |
4332352 | uncharacterized LOC4332352 | 0.83 | Very high | |
4339571 | probable purine permease 4 | 0.78 | Very high | |
4336249 | protein NRT1/ PTR FAMILY 4.5 | 0.76 | Very high | |
4340325 | uncharacterized | 0.76 | Very high | |
4350916 | uncharacterized LOC4350916 | 0.72 | High | |
4345581 | CHAPERONE-like protein of por1 | 0.71 | High | |
4335799 | photosystem I subunit O | 0.71 | High | |
4340300 | protein nuclear fusion defective 4 | 0.7 | High | |
4333501 | protein Detoxification 29 | 0.62 | High | |
107278728 | rust resistance kinase Lr10 | 0.62 | High | |
4329854 | beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase | 0.58 | High | |
4340585 | RING-H2 finger protein ATL46 | 0.57 | High | |
4337170 | probable pectinesterase/pectinesterase inhibitor 13 | 0.46 | Moderate | |
4342431 | protein Ethylene-Insensitive 2-like | 0.46 | Moderate | |
4342173 | potassium transporter 22-like | 0.44 | Moderate | |
4330248 | aquaporin PIP1-1-like | 0.41 | Moderate | |
4338289 | probable glycerol-3-phosphate acyltransferase 3 | 0.39 | Moderate | |
4330049 | probable aquaporin PIP2-2) | 0.37 | Moderate | |
4331194 | aquaporin PIP 1–3-like | 0.35 | Moderate |