Table 1 Summary of chloroplast genome features in this study, including four new chloroplast genomes of the Sanicula taxa and one newly in Eryngium, a showing the new chloroplast genome reported in this study
Species Name | GenBank Accession | Genome Size (bp) | LSC Length (bp) | SSC Length (bp) | IR Length (bp) | Overall GC content (%) | Coding regions size (%) | CDS regions size (%) | RNA regions size (%) | Noncoding regions size (%) | Number of unique genes | Number of unique genes | Number of total genes | Number of total genes | Reference | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PCGs | tRNAs | rRNAs | PCGs | tRNAs | rRNAs | ||||||||||||||
Eryngium foetidum (a) | OP703171 | 155,270 | 85,874 | 17,074 | 26,161 | 38.13 | 56.14% | 50.31% | 5.83% | 43.86% | 104 | 79 | 21 | 4 | 127 | 86 | 33 | 8 | This Study |
E. planum | MT561039 | 154,979 | 85,993 | 17,880 | 25,553 | 38.21 | 56.17% | 50.34% | 5.83% | 43.83% | 104 | 79 | 21 | 4 | 127 | 86 | 33 | 8 | Wen et al. 2021 [22] |
Sanicula caerulescens (a) | OP703178 | 155,757 | 86,209 | 17,098 | 26,225 | 38.16 | 55.92% | 50.11% | 5.81% | 44.08% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. chinensis | OP696651 | 155,378 | 85,660 | 17,074 | 26,322 | 38.25 | 56.06% | 50.24% | 5.82% | 43.94% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. flavovirens | OP703176 | 155,335 | 85,682 | 17,049 | 26,302 | 38.2 | 56.04% | 50.22% | 5.82% | 43.96% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. flavovirens | NC_061752 | 155,335 | 85,852 | 17,049 | 26,217 | 38.2 | 56.02% | 50.19% | 5.83% | 43.98% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | Yang et al. 2022 [2] |
S. giraldii | OP703177 | 155,598 | 85,846 | 17,086 | 26,333 | 38.22 | 56.00% | 50.19% | 5.81% | 44.00% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. hacquetiodes (a) | OP703172 | 155,686 | 85,933 | 17,089 | 26,332 | 38.21 | 55.96% | 50.15% | 5.81% | 44.04% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. lamelligera | OP703174 | 155,764 | 86,174 | 17,106 | 26,242 | 38.17 | 55.94% | 50.13% | 5.81% | 44.06% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. orthacantha | OP703173 | 155,662 | 86,072 | 17,114 | 26,238 | 38.17 | 55.97% | 50.16% | 5.81% | 44.03% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. orthacantha var. brevispina (a) | OP703179 | 155,396 | 85,818 | 17,094 | 26,242 | 38.18 | 56.07% | 50.25% | 5.82% | 43.93% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |
S. orthacantha var. stolonifera | MT561028 | 155,394 | 85,824 | 17,094 | 26,238 | 38.18 | 56.07% | 50.25% | 5.82% | 43.93% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | Wen et al. 2021 [22] |
S. rubriflora | MT528260 | 155,721 | 85,981 | 17,060 | 26,340 | 38.18 | 55.92% | 50.11% | 5.81% | 44.08% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | Yang et al. 2022 [2] |
S. rubriflora | NC_060324 | 155,700 | 85,981 | 17,053 | 26,333 | 38.18 | 56.00% | 50.18% | 5.82% | 44.00% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | Wang et al. 2021 [22] |
S. tienmuensis (a) | OP703175 | 155,717 | 86,075 | 17,106 | 26,268 | 38.17 | 56.00% | 50.19% | 5.81% | 44.00% | 103 | 79 | 20 | 4 | 126 | 86 | 32 | 8 | This Study |