Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines

Serajazari, Mitra; Torkamaneh, Davoud; Gordon, Emily; Lee, Elizabeth; Booker, Helen; Pauls, Karl Peter; Navabi, Alireza

doi:10.1186/s12870-023-04306-8

Table 2 Marker-FHB trait associations, allele effect, and a list of candidate genes that may be involved in FHB resistance (reference genome: IWGSC RefSeq v1.0)

From: Identification of fusarium head blight resistance markers in a genome-wide association study of CIMMYT spring synthetic hexaploid derived wheat lines

FHB trait	SNP marker	Ch	Position	%Allele effect	Potential gene	No. reported QTL [31]
DON content	wsnp_Ex_c40247_47349166	7A	116,113,239	0.04	TraesCS7A01G160000	3
	Excalibur_rep_c105343_349	2B	65,114,016	0.72	TraesCS2B01G131600LC	2
	wsnp_Ex_c22683_31887799	3B	7,066,858	0.05	TraesCS3B01G017100	26
	Tdurum_contig54548_1924	4B	488,676,151	0.08	TraesCS4B01G234400	8
	CAP12_c731_102	6B	715,704,861	0.18	TraesCS6B01G462400	New
FDK2017	BobWhite_rep_c64679_73	2B	666,650,024	0.16	TraesCS2B01G470400	5
FDK2017	Tdurum_contig51386_128	3B	750,138,040	0.49	TraesCS3B01G506600	New
FDK2019	wsnp_Ex_c1997_3756118	1A	514,137,547	0.13	TraesCS1A01G323600	3
	Tdurum_contig10482_110	4A	713,522,996	0.02	TraesCS4A01G445600	6
	Tdurum_contig49804_392	3B	4,150,864	0.04	TraesCS3B01G008000	21
	RAC875_c62400_639	5B	669,897,740	0.11	TraesCS5B01G503200	4
	BobWhite_c36455_205	3D	477,639,282	0.03	TraesCS3D01G363300	1
FHB INC2019	wsnp_CAP11_c1815_982483	1A	544,054,450	0.19	TraesCS1A01G363800	2
FHBINX2017	RAC875_c52338_1019	5A	86,661,890	0.13	TraesCS5A01G073900	5
	Excalibur_rep_c103629_346	5A	390,366,984	0.03	TraesCS5A01G188700	2
	BS00082460_51	6A	615,589,117	0.01	TraesCS6A01G416700	5
	Kukri_c9150_1181	6B	653,221,775	0.05	TraesCS6B01G378600	5
FHBINX2019	TA002539-0532	2A	598,941,707	0.27	TraesCS2A01G509100LC	6
	Excalibur_c17050_570	6A	581,484,720	0.09	TraesCS6A01G348800	1
	wsnp_Ra_c28444_37905400	2B	383,373,141	0.13	TraesCS2B01G277400	4
FHBSEV2017	wsnp_Ku_c25809_35776454	3A	525,201,271	0.17	TraesCS3A01G422800LC	2
	Excalibur_c8522_1894	7A	4,897,280	0.09	TraesCS7A01G010800	New
	GENE-4440_719	7A	14,734,369	0.09	TraesCS7A01G033500	2
	wsnp_RFL_Contig3951_4390396	1B	646,167,728	0.16	TraesCS1B01G423500	3
	IAAV4252	5B	65,243,608	0.02	TraesCS5B01G059200	2
	BS00034658_51	5B	21,006	0.11	TraesCS5B01G000100	New
FHBSEV2019	BS00024548_51	3A	700,564,359	0.19	TraesCS3A01G466700	1
	wsnp_Ku_c2376_4562448	7A	67,985,152	0.07	TraesCS7A01G110700	1
	wsnp_Ra_c28444_37905400	2B	383,373,141	0.10	TraesCS2B01G277400	3
	GENE-0293_346	3B	769,345,579	0.07	TraesCS3B01G779100LC	New

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ISSN: 1471-2229

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