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Table 2 Significant and putative QTLs for photosynthetic traits under drought-stressed (DS) and well-watered (WW) conditions in the F4 segregating population derived from S19-3 × DodR

From: Deciphering the molecular basis for photosynthetic parameters in Bambara groundnut (Vigna subterranea L. Verdc) under drought stress

Traits

Treatment

GW LOD

IM LOD

Group

Position

Locus

PVE

Additive Effect

A2

DS

2.80

2.70

5

106.49

4,178,866

29.60

–5.89

A3

DS

3.00

2.01

1A

99.53

4,183,176

25.70

–6.66

A4

WW

2.90

2.19

8

60.37

4,182,355

27.00

–10.80

A5

DS

2.90

2.27

10

32.66

4,178,651

29.50

–9.07

A6

DS

2.90

2.11

6A

0.00

4,182,879

28.50

–8.52

A6

WW

2.90

2.15

5

33.96

27,636,601

28.90

8.38

E5

WW

2.90

2.08

6A

47.37

4,178,271

27.40

1.64

gs3

DS

3.00

2.47

2

0.00

4,180,911

37.80

–0.08

gs3

WW

3.00

2.12

11

35.83

4,177,456

26.60

–0.18

gs5

DS

2.90

2.04

11

0.00

24,346,244

32.40

–0.18

gs5

WW

3.00

3.09

5

18.35

4,181,376

37.70

0.24

Ci1

DS

2.90

2.19

3

148.57

4,177,324

25.00

16.26

Ci1

WW

3.00

2.52

4

103.26

4,181,421

27.60

17.15

Ci2

DS

2.90

2.06

8

12.68

27,640,589

26.00

–21.27

Ci6

WW

2.90

2.41

11

45.18

4,183,896

29.80

–37.69

WUE2

DS

2.80

1.85

10

42.02

27,640,107

26.00

28.14

WUE3

WW

2.90

2.26

11

35.83

4,177,456

28.70

20.14

WUE5

WW

2.90

2.39

11

45.18

4,183,896

33.50

33.33

RWC2

DS

2.90

2.01

5

75.12

4,176,480

26.50

3.77

RWC3

WW

3.10

2.14

6A

5.99

4,178,051

27.90

–1.95

RWC4

DS

2.90

2.33

2

36.15

4,181,273

29.20

–3.61

FV/FM

DS

3.10

2.58

9

14.50

4,181,894

42.50

0.09

FV/FM2

WW

3.00

2.73

5

112.71

4,177,092

33.40

–0.03

FV/FM3

WW

3.00

2.05

1B

1.85

4,182,837

27.00

0.03

FV/FM4

DS

3.00

2.59

7A

4.77

4,177,991

27.20

–0.05

FV/FM4

WW

3.00

3.06

3

13.72

4,182,223

36.50

0.03

FV/FM6

DS

3.00

2.55

1A

10.61

27,640,122

32.40

0.03

FV/FM6

WW

3.00

2.26

9

30.66

37,313,543

31.10

–0.03

  1. GW LOD Genome-Wide logarithm of odds, IM LOD Interval mapping logarithm of odds, PVE Phenotypic variation explanation. A Photosynthesis rate, gs Stomatal conductance, E Transpiration rate, Ci Intracellular CO2, WUE Water use efficiency, RWC Relative water content, FV/FM Quantum yield of PSII photochemistry