Table 2 Summary of reads aligned to the barley reference genome

UZ1

42,204,013(93.48%)

36,458,616(80.76%)

5,745,397(12.73%)

18,234,761(40.39%)

18,223,855(40.37%)

UZ2

41,401,082(86.6%)

36,452,969(76.25%)

4,948,113(10.35%)

18,223,689(38.12%)

18,229,280(38.13%)

UZ3

36,043,243(86.56%)

32,037,641(76.94%)

4,005,602(9.62%)

16,014,615(38.46%)

16,023,026(38.48%)

UD1

42,259,977(87.39%)

37,232,868(77.00%)

5,027,109(10.40%)

18,620,507(38.51%)

18,612,361(38.49%)

UD2

41,110,107(89.75%)

36,684,885(80.09%)

4,425,222(9.66%)

18,342,565(40.04%)

18,342,320(40.04%)

UD3

48,810,683(87.40%)

43,433,424(77.77%)

5,377,259(9.63%)

21,727,312(38.91%)

21,706,112(38.87%)

UN1

43,486,490(92.58%)

38,030,522(80.96%)

5,455,968(11.61%)

19,032,008(40.52%)

18,998,514(40.45%)

UN2

44,843,645(92.42%)

38,502,837(79.35%)

6,340,808(13.07%)

19,270,958(39.72%)

19,231,879(39.64%)

UN3

44,030,398(92.42%)

38,281,229(80.36%)

5,749,169(12.07%)

19,159,001(40.22%)

19,122,228(40.14%)

HZ1

43,137,950(92.95%)

37,324,139(80.42%)

5,813,811(12.53%)

18,676,092(40.24%)

18,648,047(40.18%)

HZ2

43,738,955(93.45%)

37,521,433(80.16%)

6,217,522(13.28%)

18,775,838(40.11%)

18,745,595(40.05%)

HZ3

43,288,978(93.12%)

37,399,491(80.45%)

5,889,487(12.67%)

18,707,226(40.24%)

18,692,265(40.21%)

HD1

45,041,942(93.77%)

38,659,674(80.48%)

6,382,268(13.29%)

19,364,416(40.31%)

19,295,258(40.17%)

HD2

48,647,883(92.72%)

42,259,657(80.55%)

6,388,226(12.18%)

21,143,526(40.3%)

21,116,131(40.25%)

HD3

49,234,196(93.54%)

42,446,974(80.65%)

6,787,222(12.9%)

21,234,408(40.35%)

21,212,566(40.30%)

HN1

42,887,557(93.79%)

36,512,963(79.85%)

6,374,594(13.94%)

18,274,284(39.96%)

18,238,679(39.89%)

HN2

43,101,345(93.49%)

37,514,180(81.37%)

5,587,165(12.12%)

18,765,726(40.70%)

18,748,454(40.67%)

HN3

44,524,423(92.92%)

38,235,277(79.79%)

6,289,146(13.12%)

19,140,629(39.94%)

19,094,648(39.85%)