Table 1 Comparison among the database of xiaomi, TT8, Yugu1, and Zhanggu
Statistic | xiaomi | Yugu1 | Zhanggu | TT8 |
|---|---|---|---|---|
Estimated size (Mb) | 438 | 510 | 485 | NA |
Assembly size (Mb) | 429.9 | 405.7 | 423.4 | 477.6 |
Genome coverage | 98% | 80% | ~ 86% | 97% |
Contigs | 419 | 6,791 | 71,571 | NA |
Contig N50 (kb) | 18,838.5 | 126.3 | 25.4 | NA |
Scaffolds | 366 | 336 | 37,727 | 2,688 |
Scaffold N50 (Mb) | 42.4 | 47.3 | 1.0 | 53.2 |
Number of gaps | 48 | 6,455 | 34,282 | 7,136 |
Number of N’s (bp) | NA | 4,826,887 | 26,194,380 | 3,381,668 |
Genome wide annotation | org.Si.eg.db (R package) | NA | NA | NA |
Database data sets | Genome, Transcriptome, Metabolome, Variations | Genome | Genome | NA |
Database search | Gene, Variation, Planteome Ontologies, Trait Ontology | Keyword | Error: Access denied | NA |
Database tools | Blast, Gene network, Jbrowse, Motif, Chromosome Map, SiTRAIT, SiMetabolite | Blast, Jbrowse, Motif, Synteny, GSEA | Error: Access denied | NA |
Genetic transformation | Yes. The average transformation efficiency for NPTII is 23.28% | NA | NA | NA |