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Table 2 Annotated genes in Fagopyrum plastomes

From: The pan-plastome of tartary buckwheat (fagopyrum tataricum): key insights into genetic diversity and the history of lineage divergence

Gene Category

Functional Group

Gene Name

77 unique protein-coding genes

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ

Subunits of photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbM, psbT, psbZ

Small subunit of ribosome

rps2, rps3, rps4, rps7 (2), rps8, rps11, rps12*, rps14, rps15, rps16*, rps18, rps19

Large subunit of ribosome

rpl2* (2), rpl14, rpl16*, rpl20, rpl22, rpl32, rpl33, rpl36

NADH dehydrogenase

ndhA*, ndhB* (2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Cytochrome b/f complex

petA, petB*, petD*, petG, petL, petN

Subunits of ATP synthase

atpA, atpB, atpE, atpF*, atpH, atpI

RNA polymerase

rpoA, rpoB, rpoC1*, rpoC2

Large subunit of Rubisco

rbcL

Unknown function

ycf1 (2), ycf2 (2), ycf3**, ycf4

Cytochrome c biogenesis protein

ccsA

Envelope membrane protein

cemA

Subunit of ATP-dependent Clp

clpP**

Translation initiation factor

infA

Subunit of acetyl-CoA

accD

Maturase

matK

30 unique tRNA genes

Transfer RNA

trnA-UGC* (2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-UCC* (2), trnH-GUG, trnI-CAU (2), trnI-GAU* (2), trnK-UUU*, trnL-CAA (2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU (2), trnP-UGG, trnQ-UUG, trnR-ACG (2), trnR-UCU, trnS-CGA, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC (2), trnV-UAC*, trnW-CCA, trnY-GUA, trnfM-CAU

4 unique rRNA genes

Ribosomal RNA

4.5 S rRNA (2), 5 S rRNA (2), 16 S rRNA (2), 23 S rRNA (2)

  1. * Gene with one intron. ** Gene with two introns. (2) Gene with two copies.