Skip to main content

Table 3 Overlapping genes with similar expression patterns and functional annotations

From: Combining GS-assisted GWAS and transcriptome analysis to mine candidate genes for nitrogen utilization efficiency in Populus cathayana

P. cathayana id

P. trichocarpa ida

Expressionb

Traitc

Gene description

Pca01G017700

Potri.001G193300

up

GEBV-PH

Protein root UVB sensitive 1, Chloroplastic

Pca01G019120

Potri.001G209300

up

GEBV-PH

Basic blue protein

Pca01G030350

Potri.001G323700

down

GEBV-PH

CASP-like protein 1F3

Pca02G008700

Potri.002G091700

down

GEBV-PH

Protein NETWORKED 1D isoform X1

Pca02G021850

Potri.002G233100

up

GEBV-PH

Amino acid transporter AVT1H isoform X1

Pca03G006280

Potri.003G071100

up

GEBV-PH

17.4 kda class III heat shock protein

Pca04G013090

Potri.004G140900

up

GEBV-PH

Abscisic acid 8'-hydroxylase 4

Pca05G003430

Potri.005G040700

up

GEBV-GD

Histone H2AX

Pca06G003320

Potri.006G040000

down

GEBV-GD

F-box protein At2g26850 isoform X1

Pca06G021060

Potri.006G236200

up

GEBV-PH

Auxin-responsive protein IAA2

Pca08G006730

Potri.008G075200

up

GEBV-GD

Wound-induced protein 1

Pca14G009260

Potri.014G111000

up

GEBV-GD

Uncharacterized protein LOC7455383

Pca17G004580

Potri.017G053400

down

Ratio-GD

F-box/LRR-repeat protein 14

  1. a Gene models are annotated using v3.1 of the P. trichocarpa genome
  2. b Expression changes of overlapping genes
  3. c GWAS traits used to localize candidate genes