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Table 7 SNP loci were significantly associated with mature leaf size (MLZ) using cMLM-P + K in the three years

From: Genome-wide association study of leaf-related traits in tea plant in Guizhou based on genotyping-by-sequencing

SNPs

Chromosome

Position

 − Log10P

R2(%)

Allele

Year

2019

2020

2021

S1-P96765712

1

96,765,712

4.49

7.85

A/G

√

  

S1-P122201532

1

122,201,532

5.30

9.59

T/G

√

√

√

  

4.54

8.30

    
  

5.25

9.74

    

S3-P116917717

3

116,917,717

4.62

8.75

C/T

√

  

S3-P69973921

3

69,973,921

4.00

9.00

C/T

 

√

 

S6-P124718592

6

124,718,592

4.08

7.27

G/A

√

 

√

  

4.16

7.74

    

S7-P15417610

7

15,417,610

4.02

7.86

G/A

√

  

S8_P52030704

8

52,030,704

4.37

8.67

G/A

√

  

S8_P52030778

8

52,030,778

4.16

8.47

G/A

√

  

S9-P27970985

9

27,970,985

4.38

8.62

C/T

√

 

√

  

4.75

8.36

    

S9-P163812618

9

163,812,618

4.78

8.82

A/G

√

√

 
  

4.70

8.77

    
  

4.23

7.97

    

S9-P27970980

9

27,970,980

4.02

7.79

G/C

 

√

√

  

4.07

7.89

    

S10-P78788354

10

78,788,354

4.28

8.61

G/A

√

  

S11-P100806529

11

100,806,529

4.10

8.64

G/A

 

√

 

S12-P11244003

12

11,244,003

4.16

7.72

C/T

√

  

S12-P38652091

12

38,652,091

4.94

9.50

T/C

√

  

S13-P92754559

13

92,754,559

4.02

6.85

A/C

√

  

S13-P110363923

13

110,363,923

4.11

7.58

T/C

√

  

S13-P110363973

13

110,363,973

4.04

7.46

G/A

√

  

S14_P31141612

14

31,141,612

4.36

8.82

G/A

√

  

S14_P31141847

14

31,141,847

4.21

8.75

G/C

√

  

SCONTIG419-P527748

CONTIG419

527,748

4.48

9.33

C/T

√

√

 
  

4.38

9.79

    

SCONTIG758-P387428

CONTIG758

387,428

4.12

7.68

A/T

√

 Â