Table 6 The optimal model of three qualitative traits of 338 tea accessions was used for SNPs analysis
Traits | Model | SNPs | Chromosome | Position | -Log10(p) | Allele | R2(%) |
|---|---|---|---|---|---|---|---|
MLC | GLM(Q) | S1-P1076408 | 1 | 1,076,408 | 4.063 | T/G | 6.62 |
S2-P128618813 | 2 | 128,618,813 | 4.543 | G/A | 7.43 | ||
S5-P87525173 | 5 | 87,525,173 | 4.302 | C/T | 7.49 | ||
S6-P112505345 | 6 | 112,505,345 | 4.018 | A/G | 7.65 | ||
S6-P18460797 | 6 | 18,460,797 | 4.026 | A/G | 6.59 | ||
S12-P108970717 | 12 | 108,970,717 | 4.621 | A/G | 8.56 | ||
S12-P108970772 | 12 | 108,970,772 | 4.682 | T/C | 8.74 | ||
S13-P38603004 | 13 | 38,603,004 | 4.056 | G/A | 7.31 | ||
SCONTIG614-P349959 | CONTIG614 | 349,959 | 4.610 | G/A | 7.71 | ||
MLT | GLM(P) | S1-P211517178 | 1 | 211,517,178 | 4.365 | G/A | 7.90 |
S2-P11825464 | 2 | 11,825,464 | 4.655 | G/A | 8.36 | ||
S2-P11825496 | 2 | 11,825,496 | 4.381 | G/T | 7.84 | ||
S2-P171922400 | 2 | 171,922,400 | 4.046 | G/A | 7.66 | ||
S5-P162371923 | 5 | 162,371,923 | 4.103 | C/T | 5.66 | ||
S8-P129108645 | 8 | 129,108,645 | 4.020 | A/G | 6.53 | ||
S8-P129108677 | 8 | 129,108,677 | 4.185 | G/A | 6.94 | ||
S10-P119785042 | 10 | 119,785,042 | 4.252 | G/A | 7.53 | ||
S10-P13082621 | 10 | 13,082,621 | 4.825 | G/A | 8.86 | ||
S10-P13082689 | 10 | 13,082,689 | 4.609 | C/A | 8.36 | ||
S11-P101072100 | 11 | 101,072,100 | 4.014 | G/A | 7.29 | ||
S12-P32519734 | 12 | 32,519,734 | 4.214 | A/G | 7.29 | ||
S12-P136348822 | 12 | 136,348,822 | 4.861 | A/G | 8.93 | ||
S13-P55838677 | 13 | 55,838,677 | 4.758 | T/C | 7.92 | ||
S13-P122895304 | 13 | 122,895,304 | 4.921 | A/C | 8.46 | ||
S13-P122895559 | 13 | 122,895,559 | 4.302 | A/G | 7.30 | ||
SCONTIG18-P388182 | CONTIG18 | 388,182 | 4.263 | A/G | 6.98 | ||
SCONTIG446-P62289 | CONTIG446 | 62,289 | 4.108 | A/T | 7.38 | ||
MLS | cMLM(P + K) | S2-P40432827 | 2 | 40,432,827 | 4.062 | G/T | 7.21 |
S2-P130091909 | 2 | 130,091,909 | 4.050 | A/C | 7.36 | ||
S3-P30907968 | 3 | 30,907,968 | 4.028 | T/C | 7.50 | ||
S9-P110799549 | 9 | 110,799,549 | 4.354 | A/G | 7.39 | ||
S10-P87179990 | 10 | 87,179,990 | 4.201 | C/T | 7.61 | ||
S11-P12773211 | 11 | 12,773,211 | 4.033 | T/A | 6.80 | ||
S13-P6815607 | 13 | 6,815,607 | 4.256 | G/A | 7.77 | ||
S14-P34150418 | 14 | 34,150,418 | 4.272 | A/T | 7.50 | ||
S14-P107071402 | 14 | 107,071,402 | 4.282 | G/A | 7.42 | ||
SCONTIG736-P863256 | CONTIG736 | 863,256 | 4.616 | G/A | 8.55 |