Fig. 5
Manhattan plots and Q-Q plots of the 3-years (2019, 2020, 2021) cMLM-P + K model for MLZ traits of the tea plant. A MLZ-cMLM-P + K-2019; B MLZ-cMLM-P + K-2020; C MLZ-cMLM-P + K-2021; The red dashed horizontal line indicates the significance threshold (-log10(P) is about equal to 4.0); The red arrows represent SNPS that have been jointly identified for MLZ traits in three years; “16” represents Contig (A continuous long DNA sequence overlapping fragment formed by joining short DNA fragments in the process of genome sequencing.) in Manhattan plots. Manhattan plots and Q-Q plots of the 1-year optimal model for three qualitative traits (MLC, MLS, MLT). D MLC-GLM-Q; E MLS-cMLM-P + K; (F) MLT-GLM-P; The red dashed horizontal line indicates the significance threshold (-log10(P) is about equal to 4.0); The red arrows represent the ultimately significant SNPS associated with the three traits; “16” represents Contig (A continuous long DNA sequence overlapping fragment formed by joining short DNA fragments in the process of genome sequencing.) in Manhattan plots