Table 4 Haplotype analysis of non-synonymous variants in Rf candidate genes
Gene ID | Nucleotide Location | Ref | Alt | Amino acid position | Amino acid change | Index_Bulk_S | Index_Bulk_F | Δindex |
|---|---|---|---|---|---|---|---|---|
GH_D05G3183 | D05:35,158,622 | T | A | 336 | K to M | 0 | 1 | 1 |
GH_D05G3183 | D05:35,160,174 | G | C | 14 | F to L | 0 | 1 | 1 |
GH_D05G3265 | D05:38,391,931 | G | A | 162 | H to Y | 0 | 1 | 1 |
GH_D05G3265 | D05:38,392,410 | C | T | 64 | A to T | 0 | 1 | 1 |
GH_D05G3384 | D05:47,351,836 | A | G | 551 | I to T | 0 | 1 | 1 |
GH_D05G3384 | D05:47,351,896 | C | G | 531 | S to T | 0 | 1 | 1 |
GH_D05G3384 | D05:47,352,550 | C | A | 313 | R to M | 0 | 1 | 1 |
GH_D05G3384 | D05:47,352,692 | C | T | 266 | G to S | 0 | 1 | 1 |
GH_D05G3384 | D05:47,353,010 | C | A | 160 | V to F | 0 | 1 | 1 |
GH_D05G3384 | D05:47,353,066 | G | A | 141 | A to V | 0 | 1 | 1 |
GH_D05G3384 | D05:47,353,350 | C | G | 70 | E to Q | 0 | 1 | 1 |
GH_D05G3490 | D05:51,181,181 | A | T | 51 | M to L | 0 | 1 | 1 |
GH_D05G3490 | D05:51,182,087 | G | C | 111 | V to L | 0 | 1 | 1 |