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Table 2 Gene composition of chloroplast genome of 34 species of 9 genus in Subtribe Swertiinae

From: Comparative chloroplast genomics of 34 species in subtribe Swertiinae (Gentianaceae) with implications for its phylogeny

Categroy

Group of genes

Name of genes

Photosynthesis

Photosystem I

psaA, psaB, psaC, psaI, psaJ

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF,psbH, psbI, psbJ, psbK, psbL, psbM,psbN, psbT, psbZ

NADH dehydrogenase

ndhAa, ndhBa, ndhC, ndhD, ndhE, ndhF,ndhG, ndhH, ndhI, ndhJ,ndhK

Cytochrome b/f complex

petA, petBa, petDa, petG, petL, petN

ATP synthase

atpA, atpB, atpE, atpFa, atpH, atpI

Self-replication

Ribosomal proteins (SSU)

rps2, rps3, rps4, rps7, rps8, rps11, rps12c, rps14, rps15, rps16a, rps18, rps19

Ribosomal proteins (LSU)

rpl2a, rpl14, rpl16a, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36

Ribosomal RNAs

rrn4.51, rrn51, rrn161, rrn231

Transfer RNAs

tRNA-Lysa,tRNA-Gln,tRNA-Ser,tRNA-Glya,tRNA-Arg,tRNA-Cys,tRNA-Asp,tRNA-Tyr,tRNA-Glu, tRNA-Thr,tRNA-Ser,tRNA-Gly,tRNA-Met,tRNA-Ser,tRNA-Thr,tRNA-Leu,tRNA-Phe,tRNA-Val, tRNA-Gly,tRNA-Met,tRNA-Trp,tRNA-Pro,tRNA-Ile,tRNA-Leua,tRNA-Vala,tRNA-His, tRNA-Ilea1, tRNA-Alaa1,tRNA-Arg1,tRNA-Asn1,tRNA-Leu,tRNA-Asn,tRNA-Arg,tRNA-Ala,tRNA-Ile,tRNA-His

DNA-dependent RNA polymerase

rpoA, rpoB, rpoC1a, rpoC2

Other genes

Maturase

matK

Protease

clpPb

Envelope membrane protein

cemA

Subunit acetyl-CoA-carboxylase

accd

c-Type cytochrome synthesis gene

ccsA

Genes of unkown function

Conserved open reading frames

ycf1, 2a, 3b, 4, 15

  1. arepresents a gene with one intron
  2. brepresents a gene with two introns
  3. crepresents trans-splice gene