Table 5 Tentative candidate genes identified to be involved in the phenylpropanoid pathway in common bean. According to the Arabidopsis phenylpropanoid pathway genes identify, a classification of each gene in structural, regulator or transport gene is suggested
QTL | Candidate gene | Function associated (www.phytozome.net) | Pathway |
|---|---|---|---|
Phe_Pv01(1.3) | Phvul.001G019200 | MYB-like dna-binding protein MYB | Regulatory |
Phvul.001G019500 | serine protease family s10 serine carboxypeptidase | Structural | |
C_Pv01(50.9) | Phvul.001G265400 | crocetin glucosyltransferase / ugt75l6 | Structural |
Phvul.001G268700 | sf98 – O-methyltransferase family protein | Structural | |
Phe_Pv02(30.8) | Phvul.002G154600 | mate efflux family protein | Transport |
Phvul.002G159700 | myb-like DNA-binding protein myb | Regulatory | |
C_Pv02(33.7) | Phvul.002G183900 | oxidoreductase, 2og-Fe II oxygenase family protein | Structural |
Phe_Pv02(37.3) | Phvul.002G211500 | oxidoreductase, 2og-Fe II oxygenase family protein | Structural |
C_Pv02(47.9) | Phvul.002G314000 | coniferyl-aldehyde dehydrogenase (ref1) | Structural |
Phvul.002G314100 | coniferyl-aldehyde dehydrogenase (ref1) | Structural | |
Phvul.002G315400 | cytochrome p450 cyp2 subfamily | Structural | |
Phvul.002G317400 | Cation transporting ATPase, C-terminus (Cation_ATPase_C) | Transport | |
Phe_Pv04(1.2) | Phvul.004G012500 | cinnamoyl coa reductase-like protein | Structural |
Phvul.004G011400 | MYB domain protein 119 | Regulatory | |
C_Pv06(4.2) | Phvul.006G018800 | flavonoid 3’,5’-hydroxylase (cyp75a) | Structural |
Phvul.006G017600 | UDP-glycosyltransferase 85A1-related | Structural | |
Phvul.006G017500 | UDP-glycosyltransferase 85A1-related | Structural | |
C_Pv06(6.6) | Phvul.006G015400 | flavonoid 3’,5’-hydroxylase (cyp75a) | Structural |
C_Pv06(29.4) | Phvul.006G200600 | alcohol dehydrogenase related | Structural |
Phvul.006G201100 | flavonol 3-o-glucosyltransferase | Structural | |
Phvul.006G205500 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.006G205600 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.006G205700 | glucosyl/glucuronosyl transferases | Structural | |
C_Pv07(7.5) | Phvul.007G082600 | peroxidase / lactoperoxidase | Structural |
Phvul.007G082700 | peroxidase / lactoperoxidase | Structural | |
C_Pv07(28.6) | Phvul.007G171333 | transcription factor tt8 (P locus) | Regulatory |
Phvul.007G171466 | P locus | Regulatory | |
C_Pv07(33.4) | Phvul.007G215800 | myb transcription factor | Regulatory |
Phe/C_Pv08(2.7) | Phvul.008G034000 | cyanohydrin beta-glucosyltransferase | Structural |
Phvul.008G034100 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.008G034200 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.008G034300 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.008G035800 | cyanohydrin beta-glucosyltransferase | Structural | |
Phvul.008G038000 | myb-like dna-binding protein | Regulatory | |
Phvul.008G038200 | transcription factor myb113-related | Regulatory | |
Phvul.008G038400 | transcription factor myb113-related | Regulatory | |
Phvul.008G038500 | transcription factor myb113-related | Regulatory | |
Phvul.008G038600 | transcription factor myb113-related | Regulatory | |
Phvul.008G042350 | isoflavone-7-o-beta-glucoside 6’’-o-malonyltransferase | Structural | |
Phvul.008G042400 | isoflavone-7-o-beta-glucoside 6’’-o-malonyltransferase | Structural | |
Phvul.008G040166 | Isoliquiritigenin 2’-O-methyltransferase | Structural | |
Phvul.008G040232 | Isoliquiritigenin 2’-O-methyltransferase | Structural | |
Phvul.008G041500 | MYB-like dna-binding protein MYB | Regulatory | |
C_Pv08(5.8) | Phvul.008G067300 | MYB-like dna-binding protein MYB | Regulatory |
Phe_Pv08(62.5) | Phvul.008G287200 | aldo/keto reductase // s ubfamily not named | Structural |
Phvul.008G287300 | aldo/keto reductase // subfamily not named | Structural | |
Phvul.008G289500 | phenylalanine ammonia-lyase | Structural | |
Phvul.008G290200 | UDP-glycosyltransferase 71c4 | Structural | |
Phvul.008G290300 | UDP-glycosyltransferase 71c4 | Structural | |
Phvul.008G291000 | UDP-glycosyltransferase 82A1 | Structural | |
Phe_Pv09(35.4) | Phvul.009G238400 | peroxidase 16-related | Structural |
Phvul.009G239000 | h + -transporting ATPase | Transport | |
C_Pv10(1.0) | Phvul.010G009000 | glucosyl/glucuronosyl transferases | Structural |
Phvul.010G001300 | glucosyl/glucuronosyl transferases | Structural | |
Phvul.010G011400 | serine carboxypeptidase-like 1-related | Structural | |
Phvul.010G011000 | cytochrome p450 71b21-related | Structural | |
Phvul.010G010900 | cytochrome p450 71b21-related | Structural |