Table 2 Annotation of selected genes in induction stage compared to initial separation stage
From: Uncovering early transcriptional regulation during adventitious root formation in Medicago sativa
Pathway or Category | Gene ID | Nr_annotation | log2FC |
|---|---|---|---|
Ubiquinone and other terpenoid-quinone biosynthesis | MsG0280006579.01 | Probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 | 7.762589495 |
Ubiquinone and other terpenoid-quinone biosynthesis | MsG0180005984.01 | Cytochrome P450 CYP73A100 | 4.83466062 |
Ubiquinone and other terpenoid-quinone biosynthesis | MsG0880044413.01 | Probable aminotransferase TAT2 | 4.324513315 |
Circadian rhythm—plant | MsG0780041812.01 | Protein LHY | 3.46492145 |
Circadian rhythm—plant | MsG0580026193.01 | Cyclic dof factor 5 | 4.103412455 |
ABC transporters | MsG0380013272.01 | ABC transporter A family member 2 | 1.047581587 |
ABC transporters | MsG0880046436.01 | ABC transporter A family member 7 | 1.719066661 |
ABC transporters | MsG0880046542.01 | ABC transporter B family member 25 | 1.515901721 |
Monoterpenoid biosynthesis | MsG0580024207.01 | Cytochrome P450 76T24 | 10.48294899 |
Peroxisome | MsG0180002098.01 | Fe-superoxide dismutase precursor | -4.065643521 |
Peroxisome | Medicago_sativa_newGene_11598 | Peroxisomal membrane protein PMP22 | 2.367295085 |
Peroxisome (Cutin, suberine and wax biosynthesis) | MsG0480020559.01 | Fatty acyl-CoA reductase 3 | -10.97791099 |
Peroxisome (Carbon metabolism) | MsG0280009776.01 | peroxisomal (S)-2-hydroxy-acid oxidase isoform X1 | -6.013934908 |
Phenylpropanoid biosynthesis | MsG0680035643.01 | Aldehyde dehydrogenase family 2 member C4 | 8.474015401 |
Sphingolipid metabolism | Medicago_sativa_newGene_6090 | Neutral ceramidase-like | 8.227865291 |
Ribosome | MsG0280009637.01 | Ribosomal protein S3 | 4.843228763 |
Ribosome | MsG0280010384.01 | 40S ribosomal protein S28, partial | 2.7220483 |
Purine metabolism | MsG0380015085.01 | Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT | 5.73941854 |
Purine metabolism | MsG0280007219.01 | Probable serine/threonine-protein kinase PBL23 | 4.641007039 |
Carotenoid biosynthesis | MsG0580025256.01 | Probable carotenoid cleavage dioxygenase 4 | -9.68501931 |
Carotenoid biosynthesis | MsG0080048887.01 | Prolycopene isomerase | -6.471254939 |
Thiamine metabolism | MsG0180005666.01 | Thiamine thiazole synthase | -10.38466003 |
Thiamine metabolism | MsG0380014728.01 | Phosphomethylpyrimidine synthase | -5.21219167 |
Thiamine metabolism | MsG0180003780.01 | MDIS1-interacting receptor like kinase 1 | -4.845468687 |
Arachidonic acid metabolism | MsG0780041612.01 | Soluble epoxide hydrolase / lipid-phosphate phosphatase | 8.478870468 |
Fatty acid elongation | MsG0180006168.01 | 3-ketoacyl-CoA synthase 19 | -12.61374762 |
Fatty acid elongation | MsG0180005969.01 | 3-ketoacyl-CoA synthase 6 | -8.885851368 |
Isoflavonoid biosynthesis | MsG0180004323.01 | Isoflavone 7-O-methyltransferase | 9.550514169 |
Isoflavonoid biosynthesis | MsG0480022309.01 | 2-hydroxyisoflavanone synthase | 6.937667505 |
Isoflavonoid biosynthesis | MsG0480022310.01 | Isoflavone 4'-O-methyltransferase isoform X1 | 3.558529361 |
Isoflavonoid biosynthesis | MsG0480021255.01 | Isoflavone reductase homolog PCBER | 5.959739484 |
Isoflavonoid biosynthesis | MsG0280010655.01 | Coumaroyl-CoA:anthocyanidin 3-O-glucoside-6''-O-coumaroyltransferase 1 | -8.75598703 |
Flavonoid biosynthesis | MsG0780037462.01 | Flavonoid 3'-monooxygenase | -10.43258405 |
Flavonoid biosynthesis | MsG0180006187.01 | Chalcone–flavonone isomerase 2 | 6.133532142 |
Flavonoid biosynthesis | MsG0380013409.01 | Flavonoid 3',5'-hydroxylase 1 | 8.812118138 |
Linoleic acid metabolism | MsG0880042650.01 | Seed linoleate 9S-lipoxygenase | -12.30856399 |
Linoleic acid metabolism | MsG0480021111.01 | Linoleate 13S-lipoxygenase 2–1 | -11.11925928 |
Inositol phosphate metabolism | MsG0480023344.01 | Inositol-3-phosphate synthase | -13.78936363 |
Inositol phosphate metabolism | MsG0880042494.01 | Inositol oxygenase 4 | 11.78526427 |
Laccase | MsG0780038793.01 | Laccase-17 | -10.37844514 |
Laccase | MsG0380015529.01 | Laccase-3 | -6.480648874 |
Starch and sucrose metabolism | MsG0380016110.01 | Glucan endo-1,3-beta-glucosidase 4 | 3.074206858 |
Steroid biosynthesis | MsG0380012835.01 | Cycloartenol-C-24-methyltransferase | 1.174065444 |