Uncovering early transcriptional regulation during adventitious root formation in Medicago sativa

BMC Plant Biology

Table 1 Data quality of RNA-Seq in Medicago sativa

Sample Name	Clean Reads	Clean Bases	Q20 (%)	Q30 (%)	GC Content (%)
C1	22,528,809	6,725,027,284	98.05	94.59	42.39
C2	23,102,984	6,887,631,576	98.23	95.11	43.41
C3	24,047,730	7,167,433,678	98.37	95.42	42.28
Y1	21,129,771	6,338,931,300	96.79	91.36	41.84
Y2	21,753,381	6,526,014,300	96.72	91.23	41.95
Y3	22,381,492	6,714,447,600	96.79	91.41	41.79
P1	25,683,768	7,656,721,700	98.25	95.17	42.35
P2	20,890,720	6,235,774,322	96.81	92.01	41.27
P3	19,561,662	5,831,102,808	98.24	95.18	42.64
S1	24,109,775	7,201,466,086	98.27	95.19	42.15
S2	20,692,490	6,175,867,172	98.09	94.72	42.58
S3	23,324,767	6,956,505,028	98.14	94.89	43.02

C1-C3, the stem cutting isolated from the mature plant; Y1-Y3, the initial cell reprogramming; P1-P3, primordium formation at the base of the stem cutting; S1-S3, initiation of ARs and white bulges formation. Clean Bases, total number of bases in Clean Data. Q20, the percentage of bases with a mass value of 20 or greater in Clean Data; Q30, the percentage of bases with a mass value of 30 or greater in Clean Data; GC Content(%), the percentage of G and C bases in the total base in Clean Data. N (%), the percentage of bases with N in Clean Data

ISSN: 1471-2229