Table 2 Scaffold-wise summary of single nucleotide polymorphism (SNP) statistics from genotyping-by-sequencing analysis of 195 blueberry accessions
From: Genomic and evolutionary relationships among wild and cultivated blueberry species
Chromosome | Chromosome Length (bp) | Filtered SNPs (MAF > 0.05; call rate 90; DP > 3) | Average number of filtered SNPs per kb genome length |
|---|---|---|---|
Total number of taxa | 195 | Â | |
Total number of SNPs | 60,518 | Â | |
VaccDscaff 1 | 46,295,995 | 6200 | 7 |
VaccDscaff 2 | 44,818,276 | 5624 | 8 |
VaccDscaff 4 | 42,981,373 | 4871 | 9 |
VaccDscaff 6 | 42,795,824 | 4457 | 10 |
VaccDscaff 7 | 41,705,179 | 4918 | 8 |
VaccDscaff 11 | 40,122,599 | 5614 | 7 |
VaccDscaff 12 | 39,741,682 | 4091 | 10 |
VaccDscaff 13 | 39,652,356 | 5104 | 8 |
VaccDscaff 17 | 38,874,919 | 5004 | 8 |
VaccDscaff 20 | 37,996,905 | 4409 | 9 |
VaccDscaff 21 | 37,975,728 | 5001 | 8 |
VaccDscaff 22 | 37,315,645 | 5225 | 7 |