Table 2 GO enrichment analysis of the rhythmic transcripts with phase shift and amplitude changes under SD and LD
Phase shift | Number of genes | ID | Description | FDR |
0Â h | 855 | GO:0,019,216 | regulation of lipid metabolic process | 0.004372 |
GO:0,006,636 | unsaturated fatty acid biosynthetic process | 0.033974 | ||
GO:0,006,334 | nucleosome assembly | 0.033974 | ||
GO:0,009,611 | response to wounding | 0.039993 | ||
1-4Â h | 5733 | GO:0,009,765 | photosynthesis, light harvesting | 0.000315 |
GO:0,001,510 | RNA methylation | 0.009443 | ||
5-8Â h | 1982 | - | - | - |
9-12Â h | 561 | GO:0,009,646 | response to absence of light | 0.021307 |
GO:0,006,168 | adenine salvage | 0.038732 | ||
GO:0,006,333 | chromatin assembly or disassembly | 0.038732 | ||
GO:0,009,407 | toxin catabolic process | 0.038732 | ||
GO:0,002,679 | respiratory burst involved in defense response | 0.038732 | ||
GO:0,080,036 | regulation of cytokinin-activated signaling pathway | 0.038732 | ||
GO:0,007,623 | circadian rhythm | 0.038732 | ||
GO:0,050,830 | defense response to Gram-positive bacterium | 0.038732 | ||
GO:0,006,817 | phosphate ion transport | 0.041366 | ||
GO:0,046,506 | sulfolipid biosynthetic process | 0.043383 | ||
Amplitude change | Number of genes | ID | Description | FDR |
SD-strengthened | 2479 | GO:0,015,996 | chlorophyll catabolic process | 0.021017 |
GO:0,006,629 | lipid metabolic process | 0.02102 | ||
GO:0,006,656 | phosphatidylcholine biosynthetic process | 0.021017 | ||
GO:0,009,408 | response to heat | 0.021017 | ||
GO:0,007,165 | signal transduction | 0.043452 | ||
GO:0,035,556 | intracellular signal transduction | 0.044682 | ||
SD-attenuated | 340 | GO:0,000,911 | cytokinesis by cell plate formation | 5.57E-06 |
GO:0,010,583 | response to cyclopentenone | 0.000188 | ||
GO:0,008,283 | cell proliferation | 0.001297 | ||
GO:0,051,225 | spindle assembly | 0.001801 | ||
GO:0,043,987 | histone H3-S10 phosphorylation | 0.001801 | ||
GO:0,071,277 | cellular response to calcium ion | 0.001801 | ||
GO:0,051,301 | cell division | 0.002323 | ||
GO:0,016,572 | histone phosphorylation | 0.002404 | ||
GO:0,000,226 | microtubule cytoskeleton organization | 0.002941 | ||
GO:0,031,408 | oxylipin biosynthetic process | 0.003735 | ||
GO:0,009,558 | embryo sac cellularization | 0.005826 | ||
GO:0,051,726 | regulation of cell cycle | 0.008063 | ||
GO:0,042,127 | regulation of cell proliferation | 0.008169 | ||
GO:0,009,704 | de-etiolation | 0.01056 | ||
GO:0,015,994 | chlorophyll metabolic process | 0.01056 | ||
GO:0,090,333 | regulation of stomatal closure | 0.018269 | ||
GO:0,006,084 | acetyl-CoA metabolic process | 0.029092 | ||
GO:0,000,103 | sulfate assimilation | 0.031358 | ||
GO:0,010,114 | response to red light | 0.032921 | ||
GO:0,000,079 | regulation of cyclin-dependent protein serine/threonine kinase activity | 0.039571 | ||
GO:0,019,216 | regulation of lipid metabolic process | 0.046269 | ||
GO:0,000,055 | ribosomal large subunit export from nucleus | 0.046269 | ||
GO:0,019,805 | quinolinate biosynthetic process | 0.046269 | ||
GO:0,042,273 | ribosomal large subunit biogenesis | 0.046269 | ||
GO:0,051,176 | positive regulation of sulfur metabolic process | 0.046269 | ||
GO:0,051,347 | positive regulation of transferase activity | 0.046269 | ||
GO:0,070,370 | cellular heat acclimation | 0.046269 |