Table 1 Summary of RNA-seq data of samples collected under SD and LD
Time point | Clean reads | Clean bases | Q30 percentage | Total Reads | Mapped Reads | |
|---|---|---|---|---|---|---|
LD | ZT02-1 | 26,321,633 | 7,871,952,920 | 93.19% | 52,643,266 | 51,053,313 (96.98%) |
ZT02-2 | 21,882,598 | 6,549,001,050 | 94.15% | 43,765,196 | 42,580,250 (97.29%) | |
ZT05-1 | 27,084,674 | 8,104,361,492 | 93.51% | 54,169,348 | 52,580,003 (97.07%) | |
ZT05-2 | 28,649,148 | 8,568,024,658 | 93.56% | 57,298,296 | 55,575,024 (96.99%) | |
ZT08-1 | 32,066,048 | 9,589,583,626 | 93.74% | 64,132,096 | 62,244,194 (97.06%) | |
ZT08-2 | 28,663,037 | 8,574,125,150 | 93.74% | 57,326,074 | 55,743,730 (97.24%) | |
ZT11-1 | 30,677,275 | 9,177,060,916 | 93.65% | 61,354,550 | 59,577,873 (97.10%) | |
ZT11-2 | 23,983,084 | 7,175,595,724 | 93.29% | 47,966,168 | 46,581,179 (97.11%) | |
ZT14-1 | 26,925,971 | 8,052,505,520 | 93.92% | 53,851,942 | 52,318,593 (97.15%) | |
ZT14-2 | 25,417,823 | 7,599,257,510 | 93.70% | 50,835,646 | 49,323,300 (97.03%) | |
ZT17-1 | 33,457,625 | 10,010,422,544 | 93.55% | 66,915,250 | 64,968,515 (97.09%) | |
ZT17-2 | 20,766,746 | 6,212,860,922 | 93.75% | 41,533,492 | 40,333,702 (97.11%) | |
ZT20-1 | 23,430,876 | 7,011,487,036 | 93.87% | 46,861,752 | 45,460,250 (97.01%) | |
ZT20-2 | 29,659,011 | 8,873,295,840 | 93.55% | 59,318,022 | 57,527,939 (96.98%) | |
ZT23-1 | 31,512,284 | 9,424,322,988 | 93.37% | 63,024,568 | 61,050,636 (96.87%) | |
ZT23-2 | 22,580,283 | 6,756,594,052 | 93.77% | 45,160,566 | 43,796,867 (96.98%) | |
SD | ZT02-1 | 23,199,936 | 6,941,939,276 | 92.91% | 46,399,872 | 44,736,757 (96.42%) |
ZT02-2 | 21,872,672 | 6,544,191,570 | 92.59% | 43,745,344 | 42,160,350 (96.38%) | |
ZT05-1 | 20,817,060 | 6,226,933,522 | 93.15% | 41,634,120 | 40,250,667 (96.68%) | |
ZT05-2 | 21,504,896 | 6,434,810,038 | 92.91% | 43,009,792 | 41,594,910 (96.71%) | |
ZT08-1 | 26,923,663 | 8,051,025,032 | 93.63% | 53,847,326 | 52,259,506 (97.05%) | |
ZT08-2 | 24,018,373 | 7,180,476,390 | 93.97% | 48,036,746 | 46,662,046 (97.14%) | |
ZT11-1 | 23,258,589 | 6,962,452,472 | 92.94% | 46,517,178 | 44,928,284 (96.58%) | |
ZT11-2 | 22,872,893 | 6,848,013,940 | 93.48% | 45,745,786 | 44,304,932 (96.85%) | |
ZT14-1 | 21,886,436 | 6,552,647,046 | 93.68% | 43,772,872 | 42,433,602 (96.94%) | |
ZT14-2 | 27,629,362 | 8,263,889,294 | 93.40% | 55,258,724 | 53,441,744 (96.71%) | |
ZT17-1 | 22,250,747 | 6,660,876,010 | 93.63% | 44,501,494 | 43,037,893 (96.71%) | |
ZT17-2 | 23,954,561 | 7,171,762,348 | 93.36% | 47,909,122 | 46,271,953 (96.58%) | |
ZT20-1 | 19,989,579 | 5,981,657,792 | 92.18% | 39,979,158 | 38,445,139 (96.16%) | |
ZT20-2 | 24,799,448 | 7,410,007,430 | 92.77% | 49,598,896 | 47,778,300 (96.33%) | |
ZT23-1 | 22,245,857 | 6,644,693,296 | 92.35% | 44,491,714 | 42,881,649 (96.38%) | |
ZT23-2 | 22,388,748 | 6,701,270,476 | 92.34% | 44,777,496 | 43,184,110 (96.44%) | |