Table 1 PRC2 core components identified in three cotton species
Subunit | Namea | Gene ID | Genome localization | CDS length (bp) | No. of exons | Protein length (aa) | MW (kDa) | pI | Charge | GRAVY |
|---|---|---|---|---|---|---|---|---|---|---|
E(z) | GaCLF-1 | Ga10G2073 | Chr10:110,747,653–110,755,310 | 2763 | 17 | 920 | 103.329 | 8.608 | 28.5 | -0.81 |
GaCLF-2 | Ga11G1924 | Chr11:89,908,029–89,918,634 | 2769 | 17 | 922 | 103.045 | 8.431 | 25.5 | -0.722 | |
GaEZA1 | Ga12G1657 | Chr12:25,632,777–25,639,592 | 2682 | 17 | 893 | 99.665 | 7.591 | 13.5 | -0.77 | |
GrCLF-1 | Gorai.011G106100 | Chr11:12,348,918–12,357,283 | 2760 | 17 | 919 | 103.374 | 8.728 | 32 | -0.806 | |
GrCLF-2 | Gorai.007G215200 | Chr07:23,786,559–23,797,878 | 2796 | 17 | 931 | 104.551 | 8.488 | 28 | -0.672 | |
GrEZA1 | Gorai.008G139100 | Chr08:38,989,212–38,996,424 | 2661 | 17 | 886 | 98.898 | 7.399 | 10 | -0.778 | |
GhCLF-1A | Gh_A10G0823 | A10:17,007,592–17,015,253 | 2763 | 17 | 920 | 103.344 | 8.648 | 29.5 | -0.818 | |
GhCLF-1D | Gh_D10G0937 | D10:12,479,849–12,487,638 | 2793 | 17 | 930 | 104.683 | 8.624 | 29.5 | -0.782 | |
GhCLF-2A | Gh_A11G1788 | A11:32,190,386–32,201,011 | 2769 | 17 | 922 | 103.047 | 8.412 | 25.5 | -0.719 | |
GhCLF-2D | Gh_D11G1949 | D11:24,534,860–24,545,438 | 2766 | 17 | 921 | 102.801 | 8.471 | 27 | -0.733 | |
GhEZA1-A | Gh_A12G1126 | A12:64,669,626–64,676,441 | 2661 | 17 | 886 | 98.817 | 7.488 | 11 | -0.773 | |
GhEZA1-D | Gh_D12G1255 | D12:40,655,858–40,662,659 | 2685 | 17 | 894 | 99.769 | 7.496 | 11 | -0.761 | |
ESC | GaFIE | Ga13G1827 | Chr13:108,140,020–108,143,539 | 1113 | 13 | 370 | 41.541 | 6.506 | 0 | -0.14 |
GrFIE | Gorai.013G163900 | Chr13:44,496,405–44,500,407 | 1179 | 13 | 392 | 44.23 | 7.496 | 5.5 | -0.127 | |
GhFIE-A | Gh_A13G1198 | A13:65,032,252–65,035,862 | 1182 | 13 | 393 | 44.289 | 7.268 | 4.5 | -0.148 | |
GhFIE-D | Gh_D13G1494 | D13:46,561,859–46,565,374 | 1113 | 13 | 370 | 41.542 | 6.105 | -2 | -0.139 | |
Su(z)12 | GaEMF2-1 | Ga01G2053 | Chr01:98,229,921–98,239,864 | 1887 | 20 | 628 | 71.463 | 8.109 | 13 | -0.258 |
GaEMF2-2 | Ga07G0529 | Chr07:5,640,221–5,647,886 | 1863 | 20 | 620 | 70.049 | 7.863 | 11 | -0.3 | |
GrEMF2-1 | Gorai.003G112000 | Chr03:34,291,582–34,303,080 | 1890 | 21 | 629 | 71.44 | 7.898 | 12 | -0.255 | |
GrEMF2-2 | Gorai.001G051500 | Chr01:4,887,828–4,896,308 | 1872 | 21 | 623 | 70.182 | 8.006 | 12.5 | -0.295 | |
GhEMF2-1Ab | Gh_A03G0526 | A03:12,660,373–12,670,320 | 1887 | 20 | 628 | 71.554 | 8.240 | 14 | -0.285 | |
GhEMF2-1D | Gh_D03G1003 | D03:34,295,512–34,305,048 | 1887 | 20 | 628 | 71.343 | 8.111 | 13.5 | -0.273 | |
GhEMF2-2A | Gh_A07G0381 | A07:4,832,782–4,840,447 | 1872 | 20 | 623 | 70.279 | 7.738 | 10 | -0.306 | |
GhEMF2-2D | Gh_D07G0444 | D07:4,788,514–4,796,113 | 1872 | 20 | 623 | 70.276 | 7.891 | 11.5 | -0.288 | |
GaVRN2 | Ga01G2822 | Chr01:112,751,961–112,760,094 | 1356 | 16 | 451 | 51.644 | 7.545 | 6.5 | -0.417 | |
GrVRN2 | Gorai.003G176300 | Chr03:44,764,344–44,771,220 | 1281 | 15 | 426 | 48.763 | 7.013 | 3.5 | -0.437 | |
GhVRN2-A | Gh_A03G0065 | A03:1,028,419–1,037,603 | 1362 | 16 | 453 | 51.854 | 7.371 | 5.5 | -0.414 | |
GhVRN2-D | Gh_D03G1592 | D03:45,793,031–45,802,243 | 1362 | 16 | 453 | 51.789 | 7.545 | 6.5 | -0.413 | |
p55 | GaMSI1 | Ga13G0133 | Chr13:1,403,099–1,405,249 | 1275 | 4 | 424 | 48.179 | 4.484 | -26 | -0.515 |
GrMSI1 | Gorai.013G014000 | Chr13:960,697–963,463 | 1275 | 4 | 424 | 48.179 | 4.484 | -26 | -0.515 | |
GhMSI1-A | Gh_A13G0106 | A13:1,257,122–1,259,271 | 1275 | 4 | 424 | 48.225 | 4.484 | -26 | -0.507 | |
GhMSI1-D | Gh_D13G0122 | D13:1,231,942–1,234,124 | 1275 | 4 | 424 | 48.149 | 4.484 | -26 | -0.509 |