Fig. 2

Illustration of the main results obtained from the DEGs analysis. Panel (A): Summary of the differential expression analysis. Results are shown for an adjusted P-value < 0.01 and a fold-change ratio > 2. The percentage indicated in the last column is given considering the 25,808 gene models found in the pedunculate oak genome. Panel (B): Venn-diagram showing the number of genes displaying main (Dormancy, Elevation) and dormancy-by-elevation-interaction effects or a combination of them. The Bar Chart illustrate the number of genes identified per effect and their associated clusters. Panel (C) Cluster identified for the elevation responsive genes and Panel (D) clusters identified for the dormancy-by-elevation responsive genes. For Panel (C) and (D) the X-axis represents the elevation (low: 100 m of elevation, mean: 800 m of elevation and high: 1,600 m of elevation. The Y-axis represents the normalized expression value for the genes belonging to the cluster (Mean and variance fixed to 0 and 1, respectively)