Fig. 2

Region L1 on chromosome 5 related to RHL in ALL. A Chromosome-wide Manhattan plots of genome-wide HDRA (GW HDRA) SNPs (top), a pruned set of genome-wide RICE-RP SNPs (GW pruned SNPs, middle), and all RICE-RP SNPs in a chromosome-wide scan (CW All SNPs, bottom). The grey region indicates the genomic region. B Comparison of the RHL phenotype between lines carrying the alternate and reference allele at the MS-SNP. Significance is indicated by a t-test. C Magnification of the RICE-RP chromosome-wide Manhattan plot of the genomic region. Genes are overlaid on this plot and colored as follows. Green genes are expressed in root hairs or root-hair forming cells according to Huang et al. [69], orange indicates no previous expression evidence, and white indicates transposable elements