Table 3 Proteins regulated by the miRNAs during the SE of Eucalyptus
From: Proteome profiles during early stage of somatic embryogenesis of two Eucalyptus species
Eucalytpus | miRNA | log2FC | FDR | Protein | log2FC | adj_pvalue | Gene | log2FC | FDR | Protein description |
|---|---|---|---|---|---|---|---|---|---|---|
E. camaldulensis | egd-N-miR278-5p | 2.65 | 2.31E-08 | XP_010041937.1 | -2.68 | 4.87E-04 | Eucgr.B01758 | -2.09 | 3.52E-07 | sodium/hydrogen exchanger 2 |
egd-N-miR45-3p | 1.89 | 4.40E-06 | XP_010067725.1 | -2.09 | 2.41E-07 | Eucgr.G03227 | -2.23 | 6.08E-08 | aspartyl protease AED3 | |
egd-N-miR1-3p | -1.79 | 6.95E-06 | XP_010045128.1 | 2.09 | 1.20E-09 | Eucgr.B03780 | 5.08 | 6.94E-28 | protein argonaute 4 | |
egd-N-miR86-3p | -3.93 | 9.42E-19 | XP_010050073.1 | 4.35 | 1.59E-09 | Eucgr.A01561 | 3.56 | 1.35E-16 | AT-hook motif nuclear-localized protein 7 | |
egd-miR160c-5p | -12.49 | 5.84E-49 | XP_010060919.1 | 1.39 | 2.88E-09 | Eucgr.A02778 | 1.45 | 3.96E-04 | tripeptidyl-peptidase 2 isoform X1 | |
egd-miR164 | -2.98 | 5.44E-13 | XP_010043574.1 | 1.98 | 7.34E-03 | Eucgr.J00040 | 1.46 | 3.73E-04 | UDP-glucuronic acid decarboxylase 6 | |
egd-miR395 | -10.61 | 6.61E-34 | XP_010024218.1 | 2.35 | 1.91E-06 | Eucgr.H03408 | 1.92 | 2.79E-06 | ATP sulfurylase 1, chloroplastic | |
egd-miR530-5p | -5.10 | 6.60E-26 | XP_010047053.1 | 2.98 | 1.74E-08 | Eucgr.C00240 | 2.00 | 9.97E-07 | uncharacterized protein LOC104436016 | |
E. grandis x urophylla | egd-N-miR139-5p | 1.12 | 7.70E-03 | XP_018721074.1 | -1.02 | 2.74E-06 | Eucgr.K00558 | -1.19 | 5.40E-03 | protoporphyrinogen oxidase 1, chloroplastic |
egd-N-miR174-5p | 2.57 | 2.21E-07 | XP_010062805.1 | -2.69 | 2.87E-02 | Eucgr.F03259 | -2.48 | 2.45E-09 | putative serine/threonine-protein kinase | |
egd-N-miR230-5p | 1.59 | 3.55E-04 | XP_010055291.1 | -1.47 | 2.81E-02 | Eucgr.E00258 | -1.88 | 5.45E-06 | E3 ubiquitin-protein ligase RNF14 | |
egd-N-miR30-5p | 1.29 | 1.26E-03 | XP_010036653.1 | -1.28 | 8.72E-05 | Eucgr.K02010 | -1.35 | 1.24E-03 | putative calcium-transporting ATPase 11, plasma membrane-type isoform X1 | |
egd-N-miR300-5p | 3.51 | 1.28E-10 | XP_010044969.1 | -1.70 | 1.04E-03 | Eucgr.B03634 | -3.32 | 1.39E-14 | metal tolerance protein 4 | |
egd-miR169af-5p | -6.02 | 2.99E-24 | XP_010032744.1 | 1.06 | 2.76E-03 | Eucgr.J01628 | 1.17 | 6.44E-03 | cytochrome c oxidase assembly protein COX11, mitochondrial isoform X1 | |
egd-miR169r-5p | -5.01 | 1.50E-25 | XP_018717960.1 | 2.78 | 1.65E-06 | Eucgr.I01125 | 2.63 | 2.78E-10 | UDP-glucosyl transferase 73B2-like | |
egd-miR169r-5p | -5.01 | 1.50E-25 | XP_010031608.1 | 1.57 | 5.06E-04 | Eucgr.J00605 | 1.17 | 4.98E-03 | uncharacterized protein LOC104421386 | |
egd-miR396a-5p | -3.24 | 9.05E-15 | XP_010070615.1 | 5.08 | 1.43E-08 | Eucgr.H02264 | 10.08 | 5.93E-66 | probable indole-3-acetic acid-amido synthetase GH3.1 | |
egd-miR535a-5p | -1.74 | 1.26E-05 | XP_018730129.1 | 1.56 | 2.49E-04 | Eucgr.E01067 | 2.27 | 9.01E-08 | glucan endo-1,3-beta-glucosidase 11 | |
egd-miR535b-5p | -1.75 | 1.18E-05 |