Marker | Sequence | Trait | Ch. | Position (bp) | MAF | R2 (%) | Gene ID in wheat | Molecular function | Biological process |
---|---|---|---|---|---|---|---|---|---|
rs15925 | TGCAGCAGAGAGGCGCGGAAACACGCGATCTCCGCACGCTGGGCCGCCCCAGTGGGCGGCGGTC | ELI | 7A | 200,599,649-200,608,278 | 0.25 | 7.27 | TraesCS7A02G230100 | antiporter activity, xenobiotic transmembrane transporter activity | transmembrane transport |
rs15925 | TGCAGCAGAGAGGCGCGGAAACACGCGATCTCCGCACGCTGGGCCGCCCCAGTGGGCGGCGGTC | ELI | 7A | 200,599,649-200,608,278 | 0.25 | 7.27 | TraesCS7A02G230100 | antiporter activity, xenobiotic transmembrane transporter activity | Â |
rs7347 | TGCAGAGTTATAGGGAAGAAGAAGAAGGCGTACGTGGAAAAAACGATTCGAGGAGCGCTCCCGT | SPAD | 2A | 373,418,967-373,421,254 | 0.31 | 8.43 | TraesCS2A02G249000 | electron transfer activity, protein-disulfide reductase activity, glutathione oxidoreductase activity | cell redox homeostasis |
rs53540 | TGCAGGTCTCGCTAATCGATCCTCGCTTTTTTTTGAGCATCAGTACAGACACAAGCGCTCATAT | SFW | 6A | 264,830,763-264,834,472 | 0.31 | 6.97 | TraesCS6A02G192900 | protein kinase activity ATP binding | protein phosphorylation |
rs35884 | TGCAGCTCACGTAGAAGGAGACCCGACCGACAGCGCGATTCGCAAGACAGTCGACGAGCGCTTT | SDW | 3B | 768,470,821-768,482,837 | 0.12 | 9.08 | TraesCS3B02G526100 | hydrolase activity, hydrolyzing O-glycosyl compounds | carbohydrate metabolic process |
rs54146 | TGCAGGTGGAAAATGGAATCGCTAGGCCGCCGCCGAGATCGGAAGAGCGGGATCACCGACTGCC | RWC | 4A | 685,748,621-685,752,222 | 0.21 | 10.33 | TraesCS4A02G415700 | protein binding | Â |
rs257 | TGCAGAAAAGTAAGAAATTTGAAGGAGTTTTGTTCAATCACCATTTTATTACGTGTCCTCCCGA | RFW | 7B | 594,048,516-594,116,949 | 0.10 | 17.48 | TraesCS7B02G339500 | protein binding | Â |
rs37983 | TGCAGCTCTGACCGACTCCGCCTGAAGCCGCCATCGTTGCCACACAGGAGGACGACCTATTATT | RDW | 3B | 325,816,754-325,873,702 | 0.18 | 16.57 | TraesCS3B02G227800 | protein binding | Â |
rs18682 | TGCAGCAGTGGTGGTGTGCCCTTGGTCCATGCCATGTTTGTGTGCTCACCCTGTGGTTGTGGTG | RV | 1B | 688,351,698-688,354,737 | 0.38 | 10.14 | TraesCS1B02G480700 | DNA binding | nucleosome assembly regulation of transcription |
rs55629 | TGCAGTAAACCAATCAAAATGCATGGAACTCGCAGCGCTGCTCCCGCTTGTTCCCTTCGCCG | SH | 3B | 193,605,454-193,613,941 | 0.43 | 22.64 | TraesCS3B02G182700 | endoribonuclease activity, producing 5′-phosphomonoesters | tRNA processing, tRNA 3′-trailer cleavage |
rs44076 | TGCAGGAGATGGAGGGGAGCAGTAGGGGGGTTCTCTGCTCCGCAATCAGGGATCCGAGATCGGA | RH | 2D | 417,090,322-417,092,425 | 0.31 | 5.79 | TraesCS2D02G324100 | protein binding | Â |
rs34693 | TGCAGCTACGGCGACGGCGGATGGGGCCTTGTTGGTCACCCCACTGCGCGTCGCAGCGCCTAGG | Chl a | 7B | 524,991,414-525,003,565 | 0.18 | 7.05 | TraesCS7B02G289500 | DNA binding, DNA clamp loader activity, ATP binding, ATPase | resolution of meiotic recombination intermediates, DNA replication and repair, response to abscisic acid, regulation of chromatin silencing, regulation of histone H3-K9 methylation |
rs18445 | TGCAGCAGTCAGTTTCCTCCTCCTCGACTCCGACCGCCTTCGTCACCCGAGGCGTCTCTGCGTC | Chl b | 6A | 580,203,253-580,213,091 | 0.29 | 6.21 | TraesCS6A02G347900 | ionotropic glutamate receptor activity, ligand-gated ion channel activity | Â |
rs34693 | TGCAGCTACGGCGACGGCGGATGGGGCCTTGTTGGTCACCCCACTGCGCGTCGCAGCGCCTAGG | Total Chl | 7B | 524,991,414-525,003,565 | 0.18 | 7.48 | TraesCS7B02G289500 | DNA binding, DNA clamp loader activity, ATP binding, ATPase | resolution of meiotic recombination intermediates, DNA replication and repair, response to abscisic acid, regulation of chromatin silencing, regulation of histone H3-K9 methylation |
rs59624 | TGCAGTCTGGCTGCGATGGTTTCCTCGCTTCCTCCACCTTCTTTAGAAAATAGAGACGGAGGCA | Car | 6B | 604,212,469-604,220,915 | 0.31 | 6.07 | TraesCS6B02G343300 | catalytic activity, metal ion binding | proteolysis |
rs18946 | TGCAGCATAGGAAACAGAGAACAAGTTAAGGCTGGTTTTAATGGTGAGTATCATATACTATTAT | protein | 3B | 521,699,476-521,702,489 | 0.29 | 6.2 | TraesCS3B02G322400 | proton transmembrane transporter activity | ion transport, ATP synthesis coupled proton transport |
rs15183 | TGCAGCACGGCTCAATCTCCTCCTGGGACAAGATGCGCGACCGTGTTGTCGCCAACTTCTAGGG | proline | 1D | 220,060,401-220,078,971 | 0.11 | 23.21 | TraesCS1D02G156100 | hydrolase activity, metal ion binding, metalloaminopeptidase activity | Â |
rs10254 | TGCAGATTGCGCCGCTGGGCGTGCCACACGTGGCGCGCGGCTGCTACGAGAAGGCGACGGCCAT | CAT | 3B | 790,521,121-790,523,205 | 0.16 | 5.1 | TraesCS3B02G556500 | transferase activity, glycosyltransferase activity, pentosyltransferase activity | Â |
rs61179 | TGCAGTGGAAGCGGATGGTTGAGGACCTGCTGGCGCTGGGCAAACTCAACAACTGCCTCGCCGT | GPX | 1B | 28,373,087-28,375,944 | 0.14 | 6.23 | TraesCS1B02G048300 | catalytic activity, ammonia-lyase activity, phenylalanine ammonia-lyase activity | L-phenylalanine catabolic process, cinnamic acid biosynthetic process |
rs10192 | TGCAGATTGAACCCATCCTATTCTTCTGATTGAATTCATCAGTTAATTAGAAGAAGGGAAATGG | MDA | Un | 75,218,183-75,222,714 | 0.06 | 7.88 | TraesCSU02G083400 | ADP binding | Â |
rs9791 | TGCAGATGTTAGAAAACAGCCCTATACTCAATCAAGATGGCCTCAAATCAAAAAGTGTTCAGCA | MDA | 6A | 263,871,061-263,911,967 | 0.14 | 7.45 | TraesCS6A02G192800 | GTPase activity GTP binding | Â |
rs61025 | TGCAGTGCTAGCTGCATGCACGGGGGAGGCGATGCCATGGCATGGCGCGGCACGGGCACGGGCA | Na-s | 1B | 680,162,318-680,165,052 | 0.08 | 8.58 | TraesCS1B02G472200 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Â |
rs3228 | TGCAGACACAAACGTCTCGTACCAGTGGAATGTGTAAAGAATAGTTGTTATATATCTTGCCATC | Na-r | 4B | 621,667,176-621,669,677 | 0.14 | 7.26 | TraesCS4B02G330600 | acyltransferase activity, transferring groups other than amino-acyl groups | Â |
rs63185 | TGCAGTTCCATATAGCCCAAAGTAATGCGCAAATTCCTATCTGAATATGTTCGGCAATAGCTGG | K-s | Un | 67,782,631-67,803,633 | 0.45 | 11.67 | TraesCSU02G075800 | calcium ion binding | photosynthesis |
rs63185 | TGCAGTTCCATATAGCCCAAAGTAATGCGCAAATTCCTATCTGAATATGTTCGGCAATAGCTGG | K-s | 5A | 204,996,408-205,013,771 | 0.45 | 11.67 | TraesCS5A02G109600 | calcium ion binding | photosynthesis |
rs28569 | TGCAGCGACTCCAGCGTGTCCGACTTGTCGCCGTCCGTGGCCGCCGTGGCCGCGCGCACCACCA | K-r | 1A | 511,009,417-511,015,060 | 0.44 | 9.92 | TraesCS1A02G320400 | potassium ion transmembrane transporter activity | potassium ion transmembrane transport |
rs85 | TGCAGAAAAATAAAAGTTAGTTATTCGGTTGTAACCGACATAAGCTATCTCTCCAGCACGGCAG | K/Na-s | 1B | 396,597,678-396,605,441 | 0.34 | 8.2 | TraesCS1B02G219500 | ubiquitin-protein transferase activity, protein binding | protein ubiquitination interstrand cross-link repair |
rs30786 | TGCAGCGCGGCGATGACCAGGGTGACAAGGTCTCGCGGAGGCAGCGCGAGCGGGCTCCTTCAGG | K/Na-r | Un | 74,817,236-74,821,587 | 0.45 | 8.7 | TraesCSU02G082000 | sucrose synthase activity, glycosyltransferase activity | sucrose metabolic process, callose deposition in phloem sieve plate |
rs30786 | TGCAGCGCGGCGATGACCAGGGTGACAAGGTCTCGCGGAGGCAGCGCGAGCGGGCTCCTTCAGG | K/Na-r | 6D | 471,917,727-471,921,914 | 0.45 | 8.7 | TraesCS6D02G403800 | sucrose synthase activity, glycosyltransferase activity | sucrose metabolic process |