Table 4 The SNP pairs as well as their LD (r²) and distance (cM) per chromosomes (Ch.) and genomes in Iranian bread wheat cultivars and landraces

1A

85,575

0.148218

1.7377

27,125 (31.7%)

92,925

0.112764

1.5964

33,515 (36.07%)

110,025

0.109029

1.3525

48,826 (44.38%)

2A

118,025

0.292156

0.9742

57,858 (49.02%)

123,175

0.297454

0.9444

68,675 (55.75%)

135,275

0.256551

0.8608

79,620 (58.86%)

3A

83,675

0.159365

2.5764

25,903 (30.96%)

73,525

0.136413

2.9397

28,144 (38.28%)

95,125

0.132082

2.2800

44,477 (46.76%)

4A

114,925

0.371766

1.5136

57,774 (50.27%)

108,375

0.376224

1.6121

65,451 (60.39%)

128,375

0.322641

1.3876

78,844 (61.42%)

5A

59,375

0.169369

2.3835

18,718 (31.53%)

58,475

0.150278

2.4165

24,007 (41.06%)

70,475

0.135122

2.0086

31,970 (45.36%)

6A

85,175

0.181387

1.4878

29,645 (34.8%)

84,425

0.181735

1.5010

40,176 (47.59%)

97,625

0.161099

1.2981

51,977 (53.24%)

7A

128,575

0.234215

1.3445

49,426 (38.44%)

126,575

0.214252

1.3660

63,357 (50.05%)

148,075

0.195064

1.1677

78,080 (52.73%)

1B

131,075

0.206251

1.0638

49,717 (37.93%)

133,525

0.157517

1.0413

63,803 (47.78%)

149,175

0.156549

0.9350

79,917 (53.57%)

2B

165,475

0.198105

0.8592

66,129 (39.96%)

155,625

0.177663

0.9135

78,536 (50.46%)

185,625

0.157919

0.7659

101,594 (54.73%)

3B

176,175

0.245726

0.8766

78,363 (44.48%)

170,925

0.221549

0.9040

89,150 (52.16%)

199,775

0.212639

0.7742

118,862 (59.5%)

4B

51,325

0.1455

2.5168

13,477 (26.26%)

43,025

0.1018

3.0028

12,311 (28.61%)

58,725

0.117756

2.2066

23,396 (39.84%)

5B

134,225

0.204683

1.4332

55,633 (41.45%)

134,675

0.14301

1.4493

56,285 (41.79%)

150,925

0.151374

1.2942

80,074 (53.06%)

6B

158,275

0.205457

0.7884

66,108 (41.77%)

164,475

0.139023

0.7587

71,582 (43.52%)

188,775

0.139448

0.6610

98,910 (52.4%)

7B

132,875

0.156677

1.1024

41,160 (30.98%)

125,875

0.129711

1.1575

50,573 (40.18%)

148,625

0.122897

0.9885

69,532 (46.78%)

1D

37,075

0.294821

4.4091

16,539 (44.61%)

40,975

0.232567

3.8321

19,755 (48.21%)

47,275

0.24563

3.4847

25,602 (54.16%)

2D

48,025

0.23446

2.2455

16,275 (33.89%)

52,825

0.169092

2.0486

20,548 (38.9%)

67,125

0.187305

1.6133

30,724 (45.77%)

3D

25,475

0.143085

6.2861

5413 (21.25%)

30,125

0.174879

5.3156

11,411 (37.88%)

35,525

0.128602

5.2147

10,004 (28.16%)

4D

10,275

0.167587

10.5662

2189 (21.3%)

10,375

0.14746

10.7135

3543 (34.15%)

12,125

0.1343

9.1793

4233 (34.91%)

5D

22,375

0.155406

9.3377

5503 (24.59%)

24,825

0.142184

8.3614

8953 (36.06%)

30,325

0.136465

6.9287

12,067 (39.79%)

6D

28,475

0.142966

5.3691

6844 (24.04%)

33,475

0.14123

4.5658

12,606 (37.66%)

36,875

0.12788

4.1511

15,587 (42.27%)

7D

34,475

0.208327

5.7957

10,809 (31.35%)

40,475

0.153099

4.9473

14,019 (34.64%)

44,975

0.155443

4.4523

17,504 (38.92%)

A genome

675,325

0.235213

1.6204

266,449 (39.45%)

667,475

0.223484

1.6427

323,325 (48.44%)

784,975

0.197227

1.4032

413,794 (52.71%)

B genome

949,425

0.20158

1.0837

370,587 (39.03%)

928,125

0.160951

1.1104

422,240 (45.49%)

1,081,625

0.156707

0.9550

572,285 (52.91%)

D genome

206,175

0.205106

5.3432

63,572 (30.83%)

233,075

0.170391

4.7074

90,835 (38.97%)

274,225

0.168573

4.1317

115,721 (42.2%)

Whole genome

1,830,925

0.214383

1.7613

700,608 (38.27%)

1,828,675

0.184979

1.6731

836,400 (45.74%)

2,140,825

0.173084

1.5262

1,101,800 (51.47%)