Table 1 Statistics of 41 core markers

CauSNP001

Chr1

860,653

C

G

0.198

0.128

0.223

0.030

CauSNP002

Chr1

975,765

C

T

0.359

0.375

0.469

0.386

CauSNP003

Chr1

1,581,568

C

A

0.351

0.350

0.455

0.316

CauSNP004

Chr1

2,022,083

A

T

0.372

0.442

0.493

0.568

CauSNP005

Chr1

2,022,902

C

T

0.357

0.366

0.464

0.733

CauSNP006

Chr1

9,494,597

G

T

0.348

0.340

0.449

0.450

CauSNP007

Chr1

16,591,554

A

C

0.304

0.249

0.374

0.359

CauSNP009

Chr1

45,449,565

T

A

0.367

0.410

0.484

0.401

CauSNP010

Chr2

3,174,530

A

G

0.375

0.497

0.500

0.532

CauSNP011

Chr2

14,297,682

G

A

0.374

0.474

0.499

0.541

CauSNP012

Chr2

39,230,790

T

A

0.365

0.401

0.481

0.486

CauSNP013

Chr2

65,005,201

C

T

0.375

0.485

0.500

0.416

CauSNP014

Chr2

66,045,832

A

T

0.349

0.344

0.451

0.389

CauSNP016

Chr3

6,005,226

T

C

0.372

0.447

0.494

0.407

CauSNP018

Chr3

73,929,470

T

C

0.220

0.147

0.251

0.155

CauSNP019

Chr3

75,221,240

C

T

0.262

0.192

0.310

0.128

CauSNP020

Chr4

14,063,327

C

G

0.374

0.465

0.498

0.499

CauSNP021

Chr4

52,102,326

G

A

0.365

0.403

0.481

0.410

CauSNP022

Chr5

311,091

C

T

0.364

0.397

0.479

0.441

CauSNP023

Chr5

326,763

G

C

0.363

0.392

0.477

0.420

CauSNP024

Chr5

4,246,754

G

C

0.345

0.331

0.443

0.334

CauSNP025

Chr5

42,917,099

G

C

0.372

0.448

0.495

0.568

CauSNP026

Chr5

42,919,228

T

C

0.371

0.438

0.492

0.565

CauSNP027

Chr6

1,872,141

G

A

0.373

0.454

0.496

0.538

CauSNP030

Chr6

34,494,441

G

C

0.364

0.398

0.479

0.468

CauSNP031

Chr6

40,582,776

G

T

0.372

0.448

0.495

0.562

CauSNP032

Chr6

46,214,109

C

T

0.371

0.436

0.492

0.410

CauSNP033

Chr7

6,266,029

G

A

0.373

0.459

0.497

0.492

CauSNP034

Chr7

7,108,476

T

G

0.288

0.225

0.349

0.006

CauSNP036

Chr7

18,611,643

C

G

0.372

0.445

0.494

0.021

CauSNP037

Chr7

26,326,101

G

A

0.274

0.207

0.328

0.000

CauSNP038

Chr7

49,710,841

C

T

0.353

0.356

0.458

0.383

CauSNP039

Chr8

685,258

A

G

0.373

0.451

0.495

0.362

CauSNP040

Chr8

7,993,815

A

T

0.371

0.439

0.493

0.410

CauSNP041

Chr8

10,333,745

C

G

0.373

0.459

0.497

0.517

CauSNP042

Chr8

10,995,531

G

A

0.374

0.473

0.499

0.362

CauSNP044

Chr8

16,285,895

A

G

0.365

0.400

0.480

0.325

CauSNP045

Chr8

23,662,826

C

A

0.365

0.400

0.480

0.198

CauSNP046

Chr8

24,753,546

C

A

0.334

0.306

0.424

0.465

CauSNP047

Chr8

51,980,792

T

C

0.370

0.427

0.489

0.489

CauSNP048

Chr9

2,367,375

C

T

0.373

0.457

0.496

0.477